| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006318m |
| Family | GH28 |
| Protein Properties | Length: 487 Molecular Weight: 52002.6 Isoelectric Point: 6.267 |
| Chromosome | Chromosome/Scaffold: 4 Start: 361550 End: 363826 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 436 | 0 |
| GGGGAMLYVPAGKWLTGPFNLTSHFTLFLHSDAVILGSQNISEWPVIAPLPSYGRGRDKIGGRYASLIGGSNLTDVVITGNNGTIDGQGAMWWSKFHQNK LKYTRGYLVELMWSDTIFISNVTLVNSPAWNIHPVYSSNIVVQGVTILAPTRSPNTDGINPDSCSHVRIEDCYVVSGDDCVAIKSGWDEYGIAYGMPSEH IVVRRLTCVSPTSAVIALGSEMSGGIRDVRAEDITAINSESGVRIKTAVGRGNYVRDVFVRGMKLDGMKYVFWMTGNYKSHPDDGFDPNAIPVVENISYQ DVVATGVYKSAARLEGIDGAPFRGICLANVTAEFDKSRKYPWTCTDVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 487 Download |
| MASPIMLSPF LHQLVLLLVA ASGTVVAARH HHSSPAESRT GQSMYLAPSC RAHTASLADF 60 GGVGDGTTSN TAAFRSAVDH LSQYSGEGGG GAMLYVPAGK WLTGPFNLTS HFTLFLHSDA 120 VILGSQNISE WPVIAPLPSY GRGRDKIGGR YASLIGGSNL TDVVITGNNG TIDGQGAMWW 180 SKFHQNKLKY TRGYLVELMW SDTIFISNVT LVNSPAWNIH PVYSSNIVVQ GVTILAPTRS 240 PNTDGINPDS CSHVRIEDCY VVSGDDCVAI KSGWDEYGIA YGMPSEHIVV RRLTCVSPTS 300 AVIALGSEMS GGIRDVRAED ITAINSESGV RIKTAVGRGN YVRDVFVRGM KLDGMKYVFW 360 MTGNYKSHPD DGFDPNAIPV VENISYQDVV ATGVYKSAAR LEGIDGAPFR GICLANVTAE 420 FDKSRKYPWT CTDVEGVSSA DVSPAPCEAL QGKHDGACPF PTDTLPIDQV TVQQCAYDVP 480 NPKGGN* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-22 | 57 | 475 | 429 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 2.0e-23 | 59 | 447 | 418 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-24 | 54 | 444 | 407 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-30 | 155 | 447 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-54 | 33 | 356 | 347 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41831.1 | 0 | 44 | 480 | 1 | 436 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 2 | 480 | 11 | 482 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001151164.1 | 0 | 26 | 480 | 31 | 483 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002277736.1 | 0 | 37 | 479 | 29 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002437680.1 | 0 | 9 | 480 | 12 | 485 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 9.80909e-45 | 48 | 420 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 9.80909e-45 | 48 | 420 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 9.80909e-45 | 48 | 420 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 9.80909e-45 | 48 | 420 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000000004 | 71 | 343 | 26 | 295 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
