| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006319m |
| Family | GH28 |
| Protein Properties | Length: 486 Molecular Weight: 51874.5 Isoelectric Point: 6.267 |
| Chromosome | Chromosome/Scaffold: 4 Start: 361550 End: 363826 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 87 | 435 | 0 |
| GGGGAMLYVPAGKWLTGPFNLTSHFTLFLHSDAVILGSQNISEWPVIAPLPSYGRGRDKIGGRYASLIGGSNLTDVVITGNNGTIDGQGAMWWSKFHQNK LKYTRGYLVELMWSDTIFISNVTLVNSPAWNIHPVYSSNIVVQGVTILAPTRSPNTDGINPDSCSHVRIEDCYVVSGDDCVAIKSGWDEYGIAYGMPSEH IVVRRLTCVSPTSAVIALGSEMSGGIRDVRAEDITAINSESGVRIKTAVGRGNYVRDVFVRGMKLDGMKYVFWMTGNYKSHPDDGFDPNAIPVVENISYQ DVVATGVYKSAARLEGIDGAPFRGICLANVTAEFDKSRKYPWTCTDVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MASPIMLSPF LHLVLLLVAA SGTVVAARHH HSSPAESRTG QSMYLAPSCR AHTASLADFG 60 GVGDGTTSNT AAFRSAVDHL SQYSGEGGGG AMLYVPAGKW LTGPFNLTSH FTLFLHSDAV 120 ILGSQNISEW PVIAPLPSYG RGRDKIGGRY ASLIGGSNLT DVVITGNNGT IDGQGAMWWS 180 KFHQNKLKYT RGYLVELMWS DTIFISNVTL VNSPAWNIHP VYSSNIVVQG VTILAPTRSP 240 NTDGINPDSC SHVRIEDCYV VSGDDCVAIK SGWDEYGIAY GMPSEHIVVR RLTCVSPTSA 300 VIALGSEMSG GIRDVRAEDI TAINSESGVR IKTAVGRGNY VRDVFVRGMK LDGMKYVFWM 360 TGNYKSHPDD GFDPNAIPVV ENISYQDVVA TGVYKSAARL EGIDGAPFRG ICLANVTAEF 420 DKSRKYPWTC TDVEGVSSAD VSPAPCEALQ GKHDGACPFP TDTLPIDQVT VQQCAYDVPN 480 PKGGN* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 1.0e-21 | 56 | 474 | 429 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 3.0e-23 | 58 | 446 | 418 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-24 | 53 | 443 | 407 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-29 | 154 | 446 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-54 | 32 | 355 | 347 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41831.1 | 0 | 43 | 479 | 1 | 436 | glycoside hydrolase, family 28 [Zea mays] |
| DDBJ | BAD67712.1 | 0 | 2 | 479 | 11 | 482 | putative polygalacturonase [Oryza sativa Japonica Group] |
| RefSeq | NP_001151164.1 | 0 | 25 | 479 | 31 | 483 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002277736.1 | 0 | 36 | 478 | 29 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002437680.1 | 0 | 1 | 479 | 8 | 485 | hypothetical protein SORBIDRAFT_10g000660 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.96182e-44 | 47 | 419 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.96182e-44 | 47 | 419 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.96182e-44 | 47 | 419 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.96182e-44 | 47 | 419 | 21 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.0000000000004 | 70 | 342 | 26 | 295 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
