| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006382m |
| Family | GH28 |
| Protein Properties | Length: 464 Molecular Weight: 48122.4 Isoelectric Point: 6.6576 |
| Chromosome | Chromosome/Scaffold: 4 Start: 18731163 End: 18733520 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 100 | 428 | 0 |
| AWSAACAGGASTVLVPASYVFLVGPIMFTGDSCEPNMAFQVDGTILAHAGSTAWRSGVVTQWLEFKNVRGLTIKGCGTIDGQGSQWWGGASFAGDVEMEL DSDRIGTSYRPTAVRVFQGANVTVTGITIRNSARFHLTFDTCRAVEVHDVAVSSPGDSPNTDGIHLAGSVGVSIHHTTIACGDDCISIQDGCSDLFIRSV RCGPGHGISIGGLGKGGASAVVSGVTVQDVTLNQTMTGLRIKTWQGGSGSVKSVRFSDVQMSAVKTAIVIDQYYCDHTTCTNQTSAVAVAGVAYQGVAGT YTERPVYLACSDAAPCSGIHLADILLAPV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| MKRRSIPNAS SANATFLLAL LLLVTISPSF LQHCLARRES HHRPPPGGLH HAPPPTPVTP 60 PPPPASSATF SVLDYGAVGD GATDDTKASA DKLQLAFAAA WSAACAGGAS TVLVPASYVF 120 LVGPIMFTGD SCEPNMAFQV DGTILAHAGS TAWRSGVVTQ WLEFKNVRGL TIKGCGTIDG 180 QGSQWWGGAS FAGDVEMELD SDRIGTSYRP TAVRVFQGAN VTVTGITIRN SARFHLTFDT 240 CRAVEVHDVA VSSPGDSPNT DGIHLAGSVG VSIHHTTIAC GDDCISIQDG CSDLFIRSVR 300 CGPGHGISIG GLGKGGASAV VSGVTVQDVT LNQTMTGLRI KTWQGGSGSV KSVRFSDVQM 360 SAVKTAIVID QYYCDHTTCT NQTSAVAVAG VAYQGVAGTY TERPVYLACS DAAPCSGIHL 420 ADILLAPVKD SGRHLQGPFC WKAYGDEVRP VEPPVDCLSA GAP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-49 | 72 | 425 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 9.0e-52 | 72 | 423 | 354 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-54 | 72 | 423 | 355 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-60 | 111 | 423 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-74 | 72 | 459 | 394 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 62 | 463 | 93 | 504 | unknown [Populus trichocarpa] |
| GenBank | EAZ00960.1 | 0 | 1 | 463 | 2 | 432 | hypothetical protein OsI_22993 [Oryza sativa Indica Group] |
| GenBank | EAZ37024.1 | 0 | 1 | 463 | 2 | 429 | hypothetical protein OsJ_21369 [Oryza sativa Japonica Group] |
| RefSeq | XP_002266600.1 | 0 | 52 | 463 | 71 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002456022.1 | 0 | 47 | 463 | 100 | 520 | hypothetical protein SORBIDRAFT_03g029030 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-22 | 172 | 373 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 6e-21 | 178 | 433 | 80 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-21 | 178 | 433 | 80 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-21 | 178 | 433 | 80 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-21 | 178 | 433 | 80 | 326 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
