Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si006418m |
Family | PL1 |
Protein Properties | Length: 450 Molecular Weight: 50561.5 Isoelectric Point: 9.0617 |
Chromosome | Chromosome/Scaffold: 4 Start: 35247910 End: 35249458 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 368 | 0 |
WITFAKTMIITLKEELIIRGDKTIDGRGVQVRIANGAQLTVQFANNVIIHNIHINDIISSNKNGGNIRDSPDHFGWRTVSDGDGITVFGSTNVWLDHLSL SNCQDGLIDVIAKSTGVTISNCHMTNHNDVMLFSSSDKHPEDQIMQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSKAPTIISQGNRY IA |
Full Sequence |
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Protein Sequence Length: 450 Download |
MEEGFRWSRP GSFVLYAVVL LLSAAVSEAN IGEFDDYWRQ RKLMADAAAE ATYQHDPIEV 60 PNQLNRAVHR SIKKEDISTR REMLGQKKGK MNGPCKATNP IDRCWRCRKD WATDRKRLAR 120 CAQGFGRNTT GGLAGKFYVV TDGTDDDVVN PRPGTLRWAV IQIEPLWITF AKTMIITLKE 180 ELIIRGDKTI DGRGVQVRIA NGAQLTVQFA NNVIIHNIHI NDIISSNKNG GNIRDSPDHF 240 GWRTVSDGDG ITVFGSTNVW LDHLSLSNCQ DGLIDVIAKS TGVTISNCHM TNHNDVMLFS 300 SSDKHPEDQI MQITVAFNHF GRGLVQRMPR CRWGFFHVVN NDYTHWLMYA IGGSKAPTII 360 SQGNRYIAPP NLAAKQVTKQ HDAPESEWKN WVWHSEDDLF MEGAYFTVTG GQINRQFNKK 420 DLIKPKPGSY VTRLTRFAGS LDCKPGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 1.0e-13 | 30 | 83 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 7.0e-21 | 249 | 364 | 128 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-59 | 179 | 366 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-64 | 174 | 370 | 208 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF87417.1 | 0 | 5 | 449 | 7 | 444 | unknown [Zea mays] |
RefSeq | NP_001057945.1 | 0 | 26 | 449 | 30 | 448 | Os06g0583900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150723.1 | 0 | 1 | 449 | 1 | 451 | pectate lyase [Zea mays] |
RefSeq | XP_002437204.1 | 0 | 2 | 449 | 3 | 454 | hypothetical protein SORBIDRAFT_10g022830 [Sorghum bicolor] |
RefSeq | XP_002453531.1 | 0 | 5 | 449 | 8 | 445 | hypothetical protein SORBIDRAFT_04g007450 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 439 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 439 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 168 | 357 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.000000000006 | 184 | 378 | 146 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1pe9_B | 0.000000000007 | 179 | 379 | 80 | 299 | A Chain A, Bacillus Subtilis Pectate Lyase |