y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si006451m |
Family | PL1 |
Protein Properties | Length: 439 Molecular Weight: 48823.1 Isoelectric Point: 9.2356 |
Chromosome | Chromosome/Scaffold: 4 Start: 2181313 End: 2182633 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 160 | 357 | 0 |
IVFARDMVVRLRQELIVSDNKTIDGRGAQVHITGAQITLQSVSHVIIHNVHIHHSAPHSGGIIRDSKRHYGLRTRSDGDGISVLSSSNVWIDHVSMYRCS DGLIDVVNGSTGITVSNSHFTKHDHVMLFGASNDNPQDRMMQVTVAFNHFGKGLVQRMPRCRYGFFHVVNNDYTHWQMYAIGGNKNPTIISQGNRFIA |
Full Sequence |
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Protein Sequence Length: 439 Download |
MAALIIRSPL LSILFYYVLA TAVAAAAAAA ASNVTSDEEY WAERAEEARA NNRAAYVSDP 60 IAAMNRFNTE TLRATTRRSL RRYQGPCAAT NPIDSCWRCR ADWATDRQRL ALCARGFGHK 120 TTGGAGGKIY IVTDASDDEM IIPRKGTLRY GVIQGRPLWI VFARDMVVRL RQELIVSDNK 180 TIDGRGAQVH ITGAQITLQS VSHVIIHNVH IHHSAPHSGG IIRDSKRHYG LRTRSDGDGI 240 SVLSSSNVWI DHVSMYRCSD GLIDVVNGST GITVSNSHFT KHDHVMLFGA SNDNPQDRMM 300 QVTVAFNHFG KGLVQRMPRC RYGFFHVVNN DYTHWQMYAI GGNKNPTIIS QGNRFIAPDD 360 PNAKEVTKRE YTPYSEYKDW VWKSQGDVMM NGAFFNESGG QNERKYDQLD FIPARHGSYV 420 GELTKFAGTL NCRAGKPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-25 | 173 | 355 | 195 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-58 | 172 | 355 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-68 | 165 | 359 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA16476.1 | 0 | 1 | 438 | 1 | 438 | pectate lyase homolog [Zea mays] |
DDBJ | BAD68402.1 | 0 | 2 | 438 | 3 | 438 | putative pectate lyase homolog [Oryza sativa Japonica Group] |
GenBank | EAY99626.1 | 0 | 2 | 438 | 3 | 441 | hypothetical protein OsI_21605 [Oryza sativa Indica Group] |
RefSeq | NP_001056781.1 | 0 | 2 | 438 | 15 | 450 | Os06g0144200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002437815.1 | 0 | 1 | 438 | 4 | 444 | hypothetical protein SORBIDRAFT_10g003090 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 430 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 430 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-23 | 121 | 346 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 6e-16 | 121 | 355 | 24 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 6e-16 | 121 | 355 | 24 | 287 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |