| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006532m |
| Family | GH28 |
| Protein Properties | Length: 418 Molecular Weight: 43443.7 Isoelectric Point: 8.1885 |
| Chromosome | Chromosome/Scaffold: 4 Start: 33809390 End: 33810693 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 405 | 0 |
| ASACGGTGKNTILIPKGDYLVGPLNFKGPCKGDVTIQVDGNLLASTDLSLYKKNWIEILRVDNLVITGKGKLDGQGSAVWSKNSCAKKYDCKILPNSLVL DYVNNGEVSGITLLNSKFFHMNVYQCKDLVIKDVTVTAPGDSPNTDGIHMGDSSGISIVNTVIGVGDDCISIGPGSTKVNITGVTCGPGHGISIGSLGRY KDEKDVTDITVKDCTLKKSSNGLRIKAYEDAASVLTASKIHYENIKMEDAGNPIIIDMKYCPNKICTSSGASKVTVKDVSFKNITGTSSTPEAVSLLCSD KIPCSGVTMDNVKVEYSGTNNKTMAVCKNAKV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 418 Download |
| MAFTTKNAMR ALFLLALVCA VQAGKAASKD AKAADDGAAK GGGSCPSGSC DITKLGASGN 60 GKTDSTKALE EAWASACGGT GKNTILIPKG DYLVGPLNFK GPCKGDVTIQ VDGNLLASTD 120 LSLYKKNWIE ILRVDNLVIT GKGKLDGQGS AVWSKNSCAK KYDCKILPNS LVLDYVNNGE 180 VSGITLLNSK FFHMNVYQCK DLVIKDVTVT APGDSPNTDG IHMGDSSGIS IVNTVIGVGD 240 DCISIGPGST KVNITGVTCG PGHGISIGSL GRYKDEKDVT DITVKDCTLK KSSNGLRIKA 300 YEDAASVLTA SKIHYENIKM EDAGNPIIID MKYCPNKICT SSGASKVTVK DVSFKNITGT 360 SSTPEAVSLL CSDKIPCSGV TMDNVKVEYS GTNNKTMAVC KNAKVTTTAS LKELACA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-74 | 51 | 416 | 369 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-82 | 52 | 405 | 361 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-85 | 52 | 416 | 372 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-124 | 77 | 406 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-128 | 51 | 405 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA40910.1 | 0 | 7 | 416 | 2 | 405 | polygalacturonase [Zea mays] |
| RefSeq | NP_001105432.1 | 0 | 5 | 416 | 4 | 409 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | NP_001105862.1 | 0 | 7 | 416 | 6 | 409 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35339 | 0 | 7 | 416 | 6 | 409 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| RefSeq | XP_002437275.1 | 0 | 5 | 416 | 4 | 409 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-20 | 145 | 402 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-20 | 145 | 402 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-20 | 145 | 402 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-20 | 145 | 402 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-20 | 145 | 402 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
