| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006535m |
| Family | GH28 |
| Protein Properties | Length: 417 Molecular Weight: 43759.9 Isoelectric Point: 7.8632 |
| Chromosome | Chromosome/Scaffold: 4 Start: 28301120 End: 28302802 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 405 | 0 |
| ATACGKEGPQTLMIPKGDYLTGPLNFTGPCKGSVTIQLDGNLLGTTDLGQYKRNWIEINHVDNLVITGKGTLDGQGKQVWDSNKCAQKYDCKILPNSLVL DYVNNGTVSGITLLNAKFFHMNVFQCKGMMIKDVTITAPGDSPNTDGIHIGDSSKVTITGTTIGTGDDCISIGPGSTEINITGVTCGPGHGISVGSLGRY KDEKDVTDINVKDCTLKKTSNGVRIKSYEDAASKLTASKLHYENIAMEDVQNPVIIDMKYCPNKICTKNGASKVTIKDVTFKNITGTSATPEAVSLLCSD KLPCTGVTMDNIKVEYKGTNNKTMAVCQNAKGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 417 Download |
| MALNNLRVFF FLAMVVCAAH AGKPAPKGKE EKADSAAAPS GAAGGGDSSD ISKLGAKGDG 60 KTDSSKALND AWATACGKEG PQTLMIPKGD YLTGPLNFTG PCKGSVTIQL DGNLLGTTDL 120 GQYKRNWIEI NHVDNLVITG KGTLDGQGKQ VWDSNKCAQK YDCKILPNSL VLDYVNNGTV 180 SGITLLNAKF FHMNVFQCKG MMIKDVTITA PGDSPNTDGI HIGDSSKVTI TGTTIGTGDD 240 CISIGPGSTE INITGVTCGP GHGISVGSLG RYKDEKDVTD INVKDCTLKK TSNGVRIKSY 300 EDAASKLTAS KLHYENIAME DVQNPVIIDM KYCPNKICTK NGASKVTIKD VTFKNITGTS 360 ATPEAVSLLC SDKLPCTGVT MDNIKVEYKG TNNKTMAVCQ NAKGSATGCL KELACF* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-69 | 51 | 416 | 369 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 8.0e-72 | 51 | 402 | 358 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-74 | 51 | 416 | 373 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-108 | 76 | 406 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-117 | 55 | 408 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001105862.1 | 0 | 4 | 416 | 6 | 410 | exopolygalacturonase precursor [Zea mays] |
| Swiss-Prot | P35338 | 0 | 4 | 416 | 6 | 410 | PGLR2_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| Swiss-Prot | P35339 | 0 | 4 | 416 | 6 | 410 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
| RefSeq | XP_002437275.1 | 0 | 4 | 416 | 6 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| RefSeq | XP_002438528.1 | 0 | 1 | 416 | 1 | 422 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 8e-23 | 82 | 407 | 24 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-23 | 82 | 407 | 24 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 8e-23 | 82 | 407 | 24 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 8e-23 | 82 | 407 | 24 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 8e-23 | 82 | 407 | 24 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
