Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si006799m |
Family | CE8 |
Protein Properties | Length: 348 Molecular Weight: 37679 Isoelectric Point: 9.0368 |
Chromosome | Chromosome/Scaffold: 4 Start: 39316091 End: 39317470 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 337 | 0 |
EEFKTVQSAIDAVPAGNTEWIIVHLRSGVHKGKVVIPANKPFVFVRGNGKGRTSITHESASSDNAESAAFAVNADNVIVFGISFRNSARVGLVNDQGIRS VSAMVAGDKVAFYHCAFYSPHHTLYDSAGRHYYESCYIQGNIDFIFGGGQSIFQCPEIFVKPDRRTEILGSITAQDRKADDDGSGFVFLKGKVYGVGEVY LGRVSAPNSRVIFADTYLSKTVNPEGWTSIGYTGSTEKVMLAEFNCTGPGSDAAKRVPWSRRFTMNEASKYLTVDFIN |
Full Sequence |
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Protein Sequence Length: 348 Download |
MARPCLLLPL LLAAAAVLAW APGGALAKSK LAKKSDDIVN GPLLTEKLKA KRTLIVGPDE 60 EFKTVQSAID AVPAGNTEWI IVHLRSGVHK GKVVIPANKP FVFVRGNGKG RTSITHESAS 120 SDNAESAAFA VNADNVIVFG ISFRNSARVG LVNDQGIRSV SAMVAGDKVA FYHCAFYSPH 180 HTLYDSAGRH YYESCYIQGN IDFIFGGGQS IFQCPEIFVK PDRRTEILGS ITAQDRKADD 240 DGSGFVFLKG KVYGVGEVYL GRVSAPNSRV IFADTYLSKT VNPEGWTSIG YTGSTEKVML 300 AEFNCTGPGS DAAKRVPWSR RFTMNEASKY LTVDFINGKE WLPAFYY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 8.0e-68 | 61 | 342 | 283 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-69 | 42 | 342 | 306 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-69 | 47 | 343 | 309 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 9.0e-80 | 62 | 342 | 284 | + probable pectinesterase | ||
PLN02480 | PLN02480 | 0 | 36 | 346 | 313 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 25 | 345 | 23 | 345 | unknown [Glycine max] |
GenBank | EAZ26679.1 | 0 | 23 | 289 | 24 | 287 | hypothetical protein OsJ_10583 [Oryza sativa Japonica Group] |
RefSeq | NP_001049912.1 | 0 | 23 | 347 | 24 | 345 | Os03g0309400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146436.1 | 0 | 36 | 347 | 36 | 346 | hypothetical protein LOC100280019 [Zea mays] |
RefSeq | XP_002457946.1 | 0 | 1 | 347 | 1 | 346 | hypothetical protein SORBIDRAFT_03g022950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-26 | 61 | 344 | 18 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-25 | 61 | 342 | 14 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.000000003 | 60 | 345 | 16 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.000000003 | 60 | 345 | 16 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.000000003 | 60 | 345 | 16 | 341 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |