| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si006831m |
| Family | AA7 |
| Protein Properties | Length: 340 Molecular Weight: 38363.8 Isoelectric Point: 9.2916 |
| Chromosome | Chromosome/Scaffold: 4 Start: 28692772 End: 28694220 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 1 | 114 | 7.3e-37 |
| MRRYGLAADNVLDAVLVDADGRLLNRTTMGEDLFWAIRGGGGESFGVVLSWKLRLVPVPPTVTVFTVRRSRNQSASDLITKWQVIAPALPRDLILRVVVQ NQHARFEALFLGRC | |||
| Full Sequence |
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| Protein Sequence Length: 340 Download |
| MRRYGLAADN VLDAVLVDAD GRLLNRTTMG EDLFWAIRGG GGESFGVVLS WKLRLVPVPP 60 TVTVFTVRRS RNQSASDLIT KWQVIAPALP RDLILRVVVQ NQHARFEALF LGRCSRLLDH 120 MGAHFPDLGV TRADCEEISW IRSAVYFAFY SSSKPLELLL DRSGETGRFV KAKSDYVQEP 180 IPLHVWERTW SWLEKPEAGL LILDPYGGRM ASISPSATPF PHRKGNLYNL QYYSYWVENG 240 TAALGKRMGW VRGLYKEMEP YVSKNPRTGY VNYRDLDLGT NEVEGNVTSY AKGRIWGEKY 300 FKGNFERLAA VKAVVDPDDF FRHEQSIPPL PAANGWSSI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam08031 | BBE | 2.0e-18 | 270 | 328 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD54128.1 | 0 | 1 | 339 | 197 | 535 | putative CPRD2 [Oryza sativa Japonica Group] |
| GenBank | EAZ01285.1 | 0 | 38 | 339 | 199 | 500 | hypothetical protein OsI_23309 [Oryza sativa Indica Group] |
| GenBank | EEE65853.1 | 0 | 3 | 339 | 177 | 513 | hypothetical protein OsJ_21632 [Oryza sativa Japonica Group] |
| RefSeq | NP_001057826.1 | 0 | 1 | 339 | 1408 | 1746 | Os06g0548100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001143977.1 | 0 | 1 | 339 | 193 | 531 | hypothetical protein LOC100276794 [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 1 | 330 | 170 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 1 | 330 | 170 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 1 | 330 | 168 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 1 | 330 | 168 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsh_A | 0 | 1 | 330 | 168 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DR973344 | 263 | 43 | 305 | 0 |
| HX127313 | 261 | 75 | 333 | 0 |
| BM267379 | 190 | 151 | 340 | 0 |
| FF362497 | 227 | 108 | 333 | 0 |
| CJ698340 | 230 | 106 | 333 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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