| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si007823m |
| Family | GH28 |
| Protein Properties | Length: 405 Molecular Weight: 42457.7 Isoelectric Point: 9.3262 |
| Chromosome | Chromosome/Scaffold: 4 Start: 33791849 End: 33793165 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 391 | 0 |
| RACATPGRPAVVVPRGGSYLLHPLVLRGPCRGYMEVRVAGVLRAPPGLGAFRGCREWVHFSGVDGLLVTGGGTFDGRGATAWPLNECPKKRDCKLLPTSI KLGRVTNATITGVTSLDSKFFHVTVAGSHGVRIHGVTIRAPRDSPNTDGVHIQGSSDVRVTDCAVATGDDCVSVGPGASDVVVSGVTCGPGHGISVGSLG RYPGEEDVRRLRVVNCTIAGTSNGVRIKTWRGGSRPTSVSGLVFEDIVMRKVRNPIIIDQEYCPYASCRESEQRPSAVRISDVKFRNIRGVSATQVAVKL SCSEASPCRGLELRDIDLRYFKRGVSTQSQCAHVAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 405 Download |
| MASRSCALLL VLAMATTWLA ADAGAGAGPV FNVTDFGAVA DGKTDSSRAF LRAWMRACAT 60 PGRPAVVVPR GGSYLLHPLV LRGPCRGYME VRVAGVLRAP PGLGAFRGCR EWVHFSGVDG 120 LLVTGGGTFD GRGATAWPLN ECPKKRDCKL LPTSIKLGRV TNATITGVTS LDSKFFHVTV 180 AGSHGVRIHG VTIRAPRDSP NTDGVHIQGS SDVRVTDCAV ATGDDCVSVG PGASDVVVSG 240 VTCGPGHGIS VGSLGRYPGE EDVRRLRVVN CTIAGTSNGV RIKTWRGGSR PTSVSGLVFE 300 DIVMRKVRNP IIIDQEYCPY ASCRESEQRP SAVRISDVKF RNIRGVSATQ VAVKLSCSEA 360 SPCRGLELRD IDLRYFKRGV STQSQCAHVA GGVVGGTLVP PSCI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-81 | 32 | 374 | 346 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-84 | 22 | 404 | 386 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 4.0e-86 | 30 | 403 | 378 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-94 | 58 | 389 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-130 | 1 | 403 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN85236.1 | 0 | 12 | 404 | 12 | 412 | polygalacturonase precursor [Oryza minuta] |
| GenBank | ACN85327.1 | 0 | 1 | 404 | 1 | 405 | polygalacturonase precursor [Oryza brachyantha] |
| GenBank | EAZ37619.1 | 0 | 30 | 404 | 26 | 415 | hypothetical protein OsJ_21954 [Oryza sativa Japonica Group] |
| RefSeq | NP_001152243.1 | 0 | 30 | 404 | 29 | 403 | polygalacturonase [Zea mays] |
| RefSeq | XP_002437276.1 | 0 | 16 | 404 | 18 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 107 | 373 | 97 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 1e-17 | 108 | 392 | 58 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 1e-17 | 108 | 392 | 58 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 1e-17 | 108 | 392 | 58 | 336 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.000000000000005 | 108 | 392 | 54 | 333 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
