| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si008011m |
| Family | GH28 |
| Protein Properties | Length: 180 Molecular Weight: 19058.8 Isoelectric Point: 8.3844 |
| Chromosome | Chromosome/Scaffold: 4 Start: 33817571 End: 33818916 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 20 | 168 | 0 |
| HCGPGHGISIGSLGRYKDQKDVTDITVKDCTLKKSSNGLRIKAYEDAASALTASKIHYENIKMEDVGNPIIIDMKYCPNKICTSSGASKVTVKDVSFKNI TGTSSTPEAVSLLCSDKIPCSGVTMDNLKVEYSGTNNKTMAVCKNAKVT | |||
| Full Sequence |
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| Protein Sequence Length: 180 Download |
| MGKADTGSDL WVRGYLDPPH CGPGHGISIG SLGRYKDQKD VTDITVKDCT LKKSSNGLRI 60 KAYEDAASAL TASKIHYENI KMEDVGNPII IDMKYCPNKI CTSSGASKVT VKDVSFKNIT 120 GTSSTPEAVS LLCSDKIPCS GVTMDNLKVE YSGTNNKTMA VCKNAKVTAT VSLKELACA* 180 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 1.0e-29 | 21 | 165 | 145 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-34 | 21 | 167 | 147 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-35 | 21 | 158 | 139 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-52 | 20 | 167 | 148 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-53 | 21 | 169 | 149 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF19730.2 | 0 | 21 | 178 | 94 | 251 | Os06g0545800 [Oryza sativa Japonica Group] |
| RefSeq | NP_001105862.1 | 0 | 21 | 178 | 252 | 409 | exopolygalacturonase precursor [Zea mays] |
| RefSeq | XP_002437275.1 | 0 | 21 | 178 | 252 | 409 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
| RefSeq | XP_002438528.1 | 0 | 21 | 178 | 264 | 421 | hypothetical protein SORBIDRAFT_10g021590 [Sorghum bicolor] |
| RefSeq | XP_002438669.1 | 0 | 21 | 178 | 37 | 194 | hypothetical protein SORBIDRAFT_10g024000 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1czf_B | 0.00000000002 | 5 | 164 | 207 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.00000000002 | 5 | 164 | 207 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.0000000005 | 21 | 164 | 193 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000005 | 21 | 164 | 193 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000005 | 21 | 164 | 193 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FL757314 | 159 | 20 | 178 | 0 |
| CF485728 | 158 | 21 | 178 | 0 |
| FL767299 | 178 | 11 | 178 | 0 |
| CF489185 | 158 | 21 | 178 | 0 |
| CF486033 | 158 | 21 | 178 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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