Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si008588m |
Family | GT47 |
Protein Properties | Length: 520 Molecular Weight: 57875.4 Isoelectric Point: 5.7635 |
Chromosome | Chromosome/Scaffold: 4 Start: 35575806 End: 35577459 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 75 | 404 | 0 |
SCDGRYVHMVDLPPQFDVCAEGSPAFTSEHSICQLMSNAGLGPVLLPAGNRTDDGDGDADIVPNTGWYNTNQYALEVIFHNRMRLYECLTDDPAAAAAVY VPYYAAMELQPHTCGLFNATVRDGATEQLLQWLSSRPAWAALGGRDHFMVASKTSWMFRRVAAAGGDDGTGCGNSFMLKPESRNMTVLTYETVIWEQPQR DFAVPYPSYFHPSSAGEVAEWQARVRAAPRPWLFSFAGARRPNGTLAIRDRIFDACDAAVPRRTCGMLDCGHSDLCRSPRRLMSLFAASRFCLQPLGDSF MRRSSVDAVMTGCIPVFFHEASTFEKQYYW |
Full Sequence |
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Protein Sequence Length: 520 Download |
MDGNYPKYLL YVLFFLGSWL VTCLLHFRQP FFHLSGGGVV VILPFSRNVS FFSTPAAVAD 60 DDWQLTPPSS SSSRSCDGRY VHMVDLPPQF DVCAEGSPAF TSEHSICQLM SNAGLGPVLL 120 PAGNRTDDGD GDADIVPNTG WYNTNQYALE VIFHNRMRLY ECLTDDPAAA AAVYVPYYAA 180 MELQPHTCGL FNATVRDGAT EQLLQWLSSR PAWAALGGRD HFMVASKTSW MFRRVAAAGG 240 DDGTGCGNSF MLKPESRNMT VLTYETVIWE QPQRDFAVPY PSYFHPSSAG EVAEWQARVR 300 AAPRPWLFSF AGARRPNGTL AIRDRIFDAC DAAVPRRTCG MLDCGHSDLC RSPRRLMSLF 360 AASRFCLQPL GDSFMRRSSV DAVMTGCIPV FFHEASTFEK QYYWHERVPD GDHGGRSGNG 420 RSRYFVLIDQ DDVLHGKVDI EEALSRYTDD EVAAMREEVI KMIPRFLYKD PRVRFAGDMR 480 DAFDITIDEV IARIRKIKEG EDLGRKDNSG DGAVVVNGS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-46 | 134 | 392 | 266 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96790.1 | 0 | 1 | 519 | 1 | 527 | Exostosin family protein, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAH95576.1 | 0 | 142 | 519 | 94 | 466 | Os12g0224400 [Oryza sativa Japonica Group] |
GenBank | EEC69035.1 | 0 | 93 | 519 | 5 | 391 | hypothetical protein OsI_37846 [Oryza sativa Indica Group] |
GenBank | EEE52961.1 | 0 | 93 | 519 | 5 | 424 | hypothetical protein OsJ_35605 [Oryza sativa Japonica Group] |
RefSeq | XP_002443053.1 | 0 | 7 | 511 | 4 | 518 | hypothetical protein SORBIDRAFT_08g007160 [Sorghum bicolor] |