| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si009214m |
| Family | CBM53 |
| Protein Properties | Length: 1154 Molecular Weight: 130646 Isoelectric Point: 5.3317 |
| Chromosome | Chromosome/Scaffold: 7 Start: 30423616 End: 30431072 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 272 | 354 | 1.9e-31 |
| MIYLYLNRSMSTLASEPDVLIKGAFNGWRWNSFTEKLHKSELRGDWWCCELYIPKQAYRLDFVFFNGDTVYENNNHNDFFLEI | |||
| CBM53 | 607 | 695 | 9.5e-36 |
| GTTVDVLYNPSNTVLNGKPEVWFRGSFNRWTHPSGPLPPQKMVKAENGSHLQATVRVPLDAYMLDFVFSESEDGGIYDNRNGMDYHIPV | |||
| CBM53 | 445 | 535 | 1.8e-36 |
| GDRVRLYYNRSSRPLMHNNEIWMHGGYNNWIDGLSIAERLVKSHEKDGDWWYAEVTLPEKALVLDWVFADGPPGNARNYDNNERQDFHAIV | |||
| GT5 | 706 | 1148 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVEVILPKYDCLNLSNVKDLHYQQSFAWGGTEIKVWFGKVEDLPVYFLEPQNGMFWVGCVYGKNDE SRFGFFCHSALEFLLERGSSPDIIHCHDWSSAPVAWLYKEQYALNGLGNGRVVFTIHNLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYFKF HGIRNGIDPDIWDPYTDSFIPVHYTSENVAEGKSAAKKALQQKLGLQQTDTPIVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDPRIQGDFTN LASQLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDNDKDRAQAQGLEPNGFSFEGADSSGVD YALDRAITTFYDARDWFNSLCKRVMEQDWSWNRPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1154 Download |
| MEMALRAQSP LCSRGRPLLV VRPAAVLAQS TVGRSRFTGG RLVRCMVSSS DYSKRNPRRT 60 STPKPKGTAS RGGYASRPTA ESSTKKIEES STDEGDLGKS NGTLHIEATE QAGTAAKDEV 120 QATEEADQNQ SSASSSTTLD DESIDRKLDE YRGKISALVS SKSEPSSLAS VRGQEKPVVG 180 VHEQEGSTTE EHDSSIVDEP PKGRPFAEAV VGYPVKDAEE DQEQYEPEMQ APVEDDVDPE 240 VLKRRLQELA DENYSVGNKC FVFPEVVKAD SMIYLYLNRS MSTLASEPDV LIKGAFNGWR 300 WNSFTEKLHK SELRGDWWCC ELYIPKQAYR LDFVFFNGDT VYENNNHNDF FLEIESDIDE 360 HSFEDFLVEE KRKELERLAA EEAERKRQAE EERRREEERA AMEADRAQAK SEVEMKKEKL 420 HQMLSLASRY SDNLWYIEPN TYRGGDRVRL YYNRSSRPLM HNNEIWMHGG YNNWIDGLSI 480 AERLVKSHEK DGDWWYAEVT LPEKALVLDW VFADGPPGNA RNYDNNERQD FHAIVPNNIP 540 EDMFWVEEEH RIFRRLQQER REKEDADRLK AEISAKMKAE MKEKTMRAFL LSQKHIVYTE 600 PLEVRAGTTV DVLYNPSNTV LNGKPEVWFR GSFNRWTHPS GPLPPQKMVK AENGSHLQAT 660 VRVPLDAYML DFVFSESEDG GIYDNRNGMD YHIPVLDSVA KEPPMHIVHI AVEMAPIAKV 720 GGLGDVVTSL SRAVQDLGHK VEVILPKYDC LNLSNVKDLH YQQSFAWGGT EIKVWFGKVE 780 DLPVYFLEPQ NGMFWVGCVY GKNDESRFGF FCHSALEFLL ERGSSPDIIH CHDWSSAPVA 840 WLYKEQYALN GLGNGRVVFT IHNLEFGAHH IGKAMAHCDK ATTVSDTYSK EVAGHGAIAP 900 HYFKFHGIRN GIDPDIWDPY TDSFIPVHYT SENVAEGKSA AKKALQQKLG LQQTDTPIVG 960 IISRLTVQKG IHLIKHAIYR TLERNGQVVL LGSAPDPRIQ GDFTNLASQL HGEYHGRVKL 1020 CLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGS IPIVRKTGGL YDTVFDVDND 1080 KDRAQAQGLE PNGFSFEGAD SSGVDYALDR AITTFYDARD WFNSLCKRVM EQDWSWNRPA 1140 LDYMELYHSA RKN* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 7.0e-142 | 696 | 1150 | 502 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 8.0e-148 | 705 | 1150 | 488 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 4.0e-154 | 705 | 1153 | 487 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 4.0e-163 | 706 | 1149 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 60 | 1152 | 1094 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86847.1 | 0 | 1 | 1153 | 1 | 1191 | starch synthase IIIb precursor [Sorghum bicolor] |
| GenBank | ACY56216.1 | 0 | 1 | 1153 | 1 | 1216 | soluble starch synthase III-1 [Oryza sativa Japonica Group] |
| RefSeq | NP_001106015.1 | 0 | 1 | 1153 | 1 | 1191 | starch synthase IIIb-1 precursor [Zea mays] |
| RefSeq | NP_001106016.1 | 0 | 1 | 1153 | 1 | 1188 | starch synthase IIIb-2 precursor [Zea mays] |
| RefSeq | XP_002448557.1 | 0 | 1 | 1153 | 1 | 1173 | hypothetical protein SORBIDRAFT_06g029050 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 705 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 705 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 705 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 705 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 705 | 1148 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778003 | 697 | 243 | 938 | 0 |
| HO794758 | 567 | 587 | 1152 | 0 |
| HO778003 | 333 | 220 | 539 | 0.000000000000003 |
| HO778003 | 136 | 561 | 695 | 0.001 |
| HO794758 | 130 | 412 | 539 | 0.5 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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