Basic Information | |
---|---|
Species | Setaria italica |
Cazyme ID | Si010221m |
Family | PL1 |
Protein Properties | Length: 416 Molecular Weight: 45004.6 Isoelectric Point: 7.0586 |
Chromosome | Chromosome/Scaffold: 7 Start: 3304319 End: 3308008 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL1 | 136 | 334 | 0 |
IIFKRDMVITLKQELIMNSFKTIDGRGANVHISGGACITIQYVSNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTIADGDAVSIFGASHIWVDHCSLSNC ADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLA |
Full Sequence |
---|
Protein Sequence Length: 416 Download |
MVVLTVAVSC TACAVASRLL RRAGGDDDGP VAGAVEDPEA VVDDVHVSIR NSTARRNLAY 60 LSCGTGNPID DCWRCDQDWH KNRQRLADCG IGFGRNAIGG RDGKIYVVTD PSDDDAVNPR 120 KGTLRYGVIQ DEPLWIIFKR DMVITLKQEL IMNSFKTIDG RGANVHISGG ACITIQYVSN 180 VIIHGLHIHD CKPTGNAMVR SSPSHYGWRT IADGDAVSIF GASHIWVDHC SLSNCADGLI 240 DAIMGSTAIT VSNNYFTHHN EVMLLGHSDS YVKDKAMQVT IAFNHFGEGL IQRMPRCRHG 300 YFHVVNNDYT HWEMYAIGGS AEPTINSQGN RYLAPTNPFA KEVTKRVETA QTVWQSWNWR 360 SEGDLLLNGA YFTPSGAGAS ASYSRASSLG AKSSSMVGSI TSDAGALSCR KGVAC* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-27 | 154 | 347 | 208 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-72 | 147 | 332 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-82 | 141 | 335 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE02420.2 | 0 | 31 | 415 | 88 | 472 | OSJNBa0095E20.8 [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC76710.1 | 0 | 31 | 415 | 89 | 473 | hypothetical protein OsI_14719 [Oryza sativa Indica Group] |
GenBank | EEE60442.1 | 0 | 18 | 415 | 36 | 443 | hypothetical protein OsJ_13660 [Oryza sativa Japonica Group] |
RefSeq | NP_001141589.1 | 0 | 22 | 415 | 76 | 466 | hypothetical protein LOC100273705 [Zea mays] |
RefSeq | NP_001147553.1 | 0 | 25 | 415 | 87 | 467 | pectate lyase 8 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 67 | 408 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 67 | 408 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 136 | 333 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 157 | 309 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000004 | 157 | 309 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |