| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si011984m |
| Family | GH28 |
| Protein Properties | Length: 366 Molecular Weight: 38285.8 Isoelectric Point: 5.8415 |
| Chromosome | Chromosome/Scaffold: 7 Start: 27142508 End: 27144812 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 56 | 350 | 0 |
| AKAPSASMVVPPQRSFLVGPVSFQGPCASERITVQIQGNIVAPPSTAANTWTSVRNNYWLMFSRVAQGDRQRHARRQRPKLVDQDSGDAAMSIAFNLHRR MHIAILESSGVNVWGLNITAPGSSPNTDGVHIEQSQNVQVTNSRICTGDDCISMSSGSRFVTADGIECGPGHGVSIGSLGKNGDTAAVEFIDVKNVHFIN TMNGARIKTWEGGQGYAKSISFTNIEFDNVDNPVLIDQFYRDRSVARAVAISNVTYSNLKGTSSRATAVAFDCSDGGSCTDIHVESMNITGPGSS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 366 Download |
| MWTVIVVLAG LALGCGAVDN AGGELVFDVV DHGARGDGIT DDTKAFEAAW TAACGAKAPS 60 ASMVVPPQRS FLVGPVSFQG PCASERITVQ IQGNIVAPPS TAANTWTSVR NNYWLMFSRV 120 AQGDRQRHAR RQRPKLVDQD SGDAAMSIAF NLHRRMHIAI LESSGVNVWG LNITAPGSSP 180 NTDGVHIEQS QNVQVTNSRI CTGDDCISMS SGSRFVTADG IECGPGHGVS IGSLGKNGDT 240 AAVEFIDVKN VHFINTMNGA RIKTWEGGQG YAKSISFTNI EFDNVDNPVL IDQFYRDRSV 300 ARAVAISNVT YSNLKGTSSR ATAVAFDCSD GGSCTDIHVE SMNITGPGSS CQEVGGASGV 360 GVGAL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-70 | 29 | 351 | 356 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 3.0e-70 | 4 | 344 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-76 | 27 | 349 | 345 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 3.0e-77 | 24 | 344 | 349 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-78 | 27 | 352 | 356 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 27 | 357 | 23 | 383 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_195292.2 | 0 | 27 | 358 | 24 | 378 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 26 | 358 | 23 | 369 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 4 | 358 | 9 | 384 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002448332.1 | 0 | 28 | 348 | 27 | 379 | hypothetical protein SORBIDRAFT_06g025345 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000001 | 119 | 345 | 136 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.00000000000003 | 181 | 352 | 165 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.00000000000003 | 181 | 354 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 181 | 354 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 181 | 354 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
