y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si012719m |
Family | CE8 |
Protein Properties | Length: 349 Molecular Weight: 38065 Isoelectric Point: 8.3649 |
Chromosome | Chromosome/Scaffold: 7 Start: 26690167 End: 26691839 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 48 | 339 | 0 |
VVVDAGGAGDFTSIQQAVDSVPVNNNVRVIMQINAGTYIEKVLVPASKPYITFHGAGRDVTVVQWHDRASDPGPDGQPLRTYNTASVTILSNYFTAKNIS FKNTAPAPMPGTQGGQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRHYFRDCYIEGSIDFVFGNARSLYKDCELRSTAERYGSVAAHGRHDPCERTGFA FVNCRVTGTGRLYVGRAMGQYSRIVYAYTYFDSVIAPGGWDDWDHASNKSMTAFFGMYRNWGPGVDAVHGVPWARELDYFAARPFLGKSFVN |
Full Sequence |
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Protein Sequence Length: 349 Download |
MARVVLLLVL LATLAGILPP SACQAATKCE YPRPSGHGYK HPVGVRKVVV DAGGAGDFTS 60 IQQAVDSVPV NNNVRVIMQI NAGTYIEKVL VPASKPYITF HGAGRDVTVV QWHDRASDPG 120 PDGQPLRTYN TASVTILSNY FTAKNISFKN TAPAPMPGTQ GGQAVAFRIS GDKAFFFGCG 180 FYGAQDTLCD DAGRHYFRDC YIEGSIDFVF GNARSLYKDC ELRSTAERYG SVAAHGRHDP 240 CERTGFAFVN CRVTGTGRLY VGRAMGQYSR IVYAYTYFDS VIAPGGWDDW DHASNKSMTA 300 FFGMYRNWGP GVDAVHGVPW ARELDYFAAR PFLGKSFVNG YHWLTPDV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-104 | 45 | 346 | 304 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-107 | 50 | 346 | 306 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-117 | 44 | 344 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-142 | 46 | 346 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 13 | 346 | 336 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD65006.1 | 0 | 21 | 346 | 18 | 341 | pectinesterase family protein [Brassica oleracea] |
GenBank | ACL53825.1 | 0 | 24 | 348 | 25 | 349 | unknown [Zea mays] |
EMBL | CAD41229.2 | 0 | 7 | 348 | 1 | 344 | OSJNBa0010H02.16 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002303355.1 | 0 | 37 | 346 | 5 | 314 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002448293.1 | 0 | 1 | 348 | 1 | 350 | hypothetical protein SORBIDRAFT_06g024730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 47 | 344 | 8 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-36 | 45 | 344 | 2 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-18 | 49 | 254 | 34 | 253 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.000000000000003 | 58 | 224 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000000003 | 58 | 224 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |