| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si013121m |
| Family | CBM53 |
| Protein Properties | Length: 1415 Molecular Weight: 159954 Isoelectric Point: 4.7833 |
| Chromosome | Chromosome/Scaffold: 6 Start: 2790448 End: 2799808 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM53 | 535 | 618 | 2.3e-32 |
| STIDLYFNRDLSSLANEPDVLIKGAFNGWRWKFFTEKLHKSELGGDWWSCKLYIPKEAYRLDFVFFNGRTMYENNGRKDFVIPI | |||
| CBM53 | 868 | 956 | 1.4e-33 |
| GTTVDVLYNPSNTVLKGKPEVWFRCSFNRWMHPGGVLPPQKMVKAEHGSHLKATVNVPHDAYIMDFVFSESEEGGIFDNRNGLDYHIPV | |||
| CBM53 | 706 | 793 | 2.9e-35 |
| ATVRLYYNRHSRPLVHSTEIWMHGGYNNWIDGLSFSERLVHIDDKDGDWWYADVALPQRAYVLDCVFADGPPGNARNYDNNGRQDFHA | |||
| GT5 | 967 | 1409 | 0 |
| HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKHDCLNLSNVKNLHIHQNFSWDGSEIKVWRGLVEDLCVYFLEPQNGMFGVGCVYGRNDD RRFGFFCHSALEFLHQRGSSPNIIHCHDWSSAPTAWLYKENYVQSSLANARVVFTIHNLEFGAHHIGKAMKYCDKATTVSNTYSREVSGHGAIAPHLGKF YGILNGIDQDIWDPYSDSFIPVQYTSENVVEGKRAAKRALQQKFGLQQNDVPIVGIISRLTAQKGIHLIKHAIQRTLERNGQVVLLGSAPDPRIQGDFTN LAHDLQNQNHGRARLCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGAIPIVRKTGGLYDTVFDVDNDKDRARARGLEPNGFSFDGADSNGVD YALNRAITSWFDARDWFHSLCKRVMEQDWSWNRPALDYIELYR | |||
| Full Sequence |
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| Protein Sequence Length: 1415 Download |
| MEMALLPRSP LCSRGRSAPV VRPTTLDGGS AQPFLRTSGF ARSRIIWCTV ASSDCPNRKS 60 RKMVYPKVKL TAFSGYVPRL PAESSTEKSE HHDSDEGDGI YNRLLSTDIE GLETAEVDLP 120 ENASSSSAYG EVDVAEEAAL DMVEVELSRN ALTNMSLGEV EAVDEAAVEE DKFAVDLSGI 180 ELSIAAVCEL DPKDEAKAKE DIFMAVESSD ETSDVENEQW QYPALPSTSI EDKANNETHG 240 SLKPQSMPLV RVQEQGKSIV GVPEQIQSIV VYRKPDQSIV ASHRKDESIA VVPEQIQSVV 300 GYSKPDQSIV GVPDQIKSIV GYSKVEQSVV HIPKEEQSVV GFPKQDLSIV GTTKESQTKK 360 LDFPGSHHAF RTEGVEAKEG DYTPQKPDGD MLHAKSDVDD LLQKHKKDFS EEESETITSI 420 EEQINTSMEE EQCIVTEEGI PEVEDEMETG EDRFLHQLSE EESSWAEDEV ETTEDEEQYE 480 VEESSFVSAE QDTQESPQDY LDPQALQRML QELAEKNYSL GNKLFVFPEV LKADSTIDLY 540 FNRDLSSLAN EPDVLIKGAF NGWRWKFFTE KLHKSELGGD WWSCKLYIPK EAYRLDFVFF 600 NGRTMYENNG RKDFVIPIES TMDEHSFADF LVEEKQRELE REAQRKSQTE EQQRLEEERA 660 ANEADRAQAK AEVQTQKIKL QNVLDSAKAS VDNLWYIEPI TTMQGATVRL YYNRHSRPLV 720 HSTEIWMHGG YNNWIDGLSF SERLVHIDDK DGDWWYADVA LPQRAYVLDC VFADGPPGNA 780 RNYDNNGRQD FHAILPNSIM TEEGYWVEEE QRIYTRIQRE RREREEAIKM KAERRAKMKA 840 EMREKTMRMF LVSQKHIVYT EPLEIRAGTT VDVLYNPSNT VLKGKPEVWF RCSFNRWMHP 900 GGVLPPQKMV KAEHGSHLKA TVNVPHDAYI MDFVFSESEE GGIFDNRNGL DYHIPVFGSI 960 AKEPPMHIVH IAVEMAPIAK VGGLGDVVTS LSRAVQDLGH NVEVILPKHD CLNLSNVKNL 1020 HIHQNFSWDG SEIKVWRGLV EDLCVYFLEP QNGMFGVGCV YGRNDDRRFG FFCHSALEFL 1080 HQRGSSPNII HCHDWSSAPT AWLYKENYVQ SSLANARVVF TIHNLEFGAH HIGKAMKYCD 1140 KATTVSNTYS REVSGHGAIA PHLGKFYGIL NGIDQDIWDP YSDSFIPVQY TSENVVEGKR 1200 AAKRALQQKF GLQQNDVPIV GIISRLTAQK GIHLIKHAIQ RTLERNGQVV LLGSAPDPRI 1260 QGDFTNLAHD LQNQNHGRAR LCLTYDEPLS HLIYAGSDFI LVPSIFEPCG LTQLVAMRYG 1320 AIPIVRKTGG LYDTVFDVDN DKDRARARGL EPNGFSFDGA DSNGVDYALN RAITSWFDAR 1380 DWFHSLCKRV MEQDWSWNRP ALDYIELYRS ASKL* 1440 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 0.0003 | 63 | 152 | 96 | + synthase/transferase | ||
| TIGR02095 | glgA | 8.0e-155 | 966 | 1411 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 3.0e-160 | 966 | 1411 | 482 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-171 | 967 | 1410 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 504 | 1413 | 915 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86846.1 | 0 | 1 | 367 | 1 | 435 | starch synthase IIIa precursor [Sorghum bicolor] |
| GenBank | ACC86846.1 | 0 | 255 | 1414 | 527 | 1684 | starch synthase IIIa precursor [Sorghum bicolor] |
| RefSeq | NP_001104881.1 | 0 | 249 | 1414 | 481 | 1674 | starch synthase DULL1 [Zea mays] |
| RefSeq | XP_002443985.1 | 0 | 1 | 442 | 1 | 566 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| RefSeq | XP_002443985.1 | 0 | 255 | 1414 | 507 | 1664 | hypothetical protein SORBIDRAFT_07g005400 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 966 | 1408 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 966 | 1408 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 966 | 1408 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 966 | 1408 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 966 | 1408 | 1 | 473 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794758 | 568 | 848 | 1414 | 0 |
| HO778003 | 715 | 501 | 1210 | 0 |
| GT033751 | 342 | 1017 | 1358 | 0 |
| HO794758 | 109 | 696 | 802 | 0.17 |
| HO794758 | 112 | 515 | 618 | 0.17 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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