| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si013260m |
| Family | GH35 |
| Protein Properties | Length: 829 Molecular Weight: 93251 Isoelectric Point: 9.0627 |
| Chromosome | Chromosome/Scaffold: 6 Start: 35047956 End: 35052008 |
| Description | glycosyl hydrolase family 35 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 25 | 329 | 0 |
| LMIDGRREIFFSGSIHYPRSPPDMWPDLIVKAKEGGLNVIESYVFWNIHEPEKGVLNFEGRYDMVKFFKMIQEHDMYAIVRIGPFIQAEWNHGGLPYWLR EVPDIVFRTNNEPFKMLMEKFVNLIVKKLKDANLFASQGGPIILAQIENEYQHLEAVFKEEGTKYINWAAKMAQATNTGVPWFMCKQTKAPGEVIPTCNG RNCGDTWPGPTNKTMPLLWTENWTAQYRVFGDPPSQRSAEDLAFAVARFFSVGGTMTNYYMYHGGTNFGRTAAAFVMPKYYDEAPLDEFGLYKEPKWGHL RDLHQ | |||
| Full Sequence |
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| Protein Sequence Length: 829 Download |
| MAPGAAAAWE LTKKGTVVSY DRRSLMIDGR REIFFSGSIH YPRSPPDMWP DLIVKAKEGG 60 LNVIESYVFW NIHEPEKGVL NFEGRYDMVK FFKMIQEHDM YAIVRIGPFI QAEWNHGGLP 120 YWLREVPDIV FRTNNEPFKM LMEKFVNLIV KKLKDANLFA SQGGPIILAQ IENEYQHLEA 180 VFKEEGTKYI NWAAKMAQAT NTGVPWFMCK QTKAPGEVIP TCNGRNCGDT WPGPTNKTMP 240 LLWTENWTAQ YRVFGDPPSQ RSAEDLAFAV ARFFSVGGTM TNYYMYHGGT NFGRTAAAFV 300 MPKYYDEAPL DEFGLYKEPK WGHLRDLHQA LRLCKKALLW GTPSVQKLGK QFEARVFELK 360 EQNVCVAFLS NHNTKDDVTM TFRGQPYFVP RHSISILADC KTVVFSTQHV NAQHNQRTFH 420 FTEQTVQNNV WQMFDEEKVP KYKQAKIRTR KAQELYNLTK DKTDYVWYTS SFKLEADDMP 480 FRRDVRPVLE VNSHGHASVA FVNNVFVGCG HGTKMNKAFL LQKPMNLKMG VNHVAVLSST 540 LGMMDSGAYL EHREAGIDRV QILGLNAGTL DLTNNGWGHI IGLVGEQKEI YTEKGMGSVT 600 WKPAVKDKPL TWYKRHFDMP SGEDPVVLDL SPMGKGMMYV NGEGIGRYWI SYKHALGRPS 660 QQLYHVPRSF LREKNNVLVL FEEEGGHPDA IMILTVKRDN ICTFISEKNP AHIKSWQRTD 720 SQITAKGGGD LKPKATLSCP LKKVIQQVVF ASFGNPQGIC GNYTAGSCHT PRAKEVAEKA 780 CLGQRTCTLP VAADVYGGDL NCPGTTATLA VQVKCSKRSP GAPAAAAQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02449 | Glyco_hydro_42 | 0.002 | 45 | 175 | 145 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
| pfam02140 | Gal_Lectin | 3.0e-19 | 737 | 815 | 83 | + Galactose binding lectin domain. | ||
| COG1874 | LacA | 2.0e-19 | 18 | 175 | 169 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
| pfam01301 | Glyco_hydro_35 | 4.0e-137 | 24 | 331 | 322 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 18 | 816 | 825 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL54349.1 | 0 | 9 | 822 | 34 | 848 | unknown [Zea mays] |
| GenBank | EEE69115.1 | 0 | 10 | 826 | 25 | 847 | hypothetical protein OsJ_28192 [Oryza sativa Japonica Group] |
| GenBank | EEE70132.1 | 0 | 9 | 825 | 27 | 838 | hypothetical protein OsJ_30164 [Oryza sativa Japonica Group] |
| RefSeq | NP_001062440.1 | 0 | 10 | 826 | 25 | 847 | Os08g0549200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445734.1 | 0 | 12 | 824 | 32 | 843 | hypothetical protein SORBIDRAFT_07g024870 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 2e-39 | 22 | 327 | 12 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 2e-36 | 12 | 329 | 5 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 2e-36 | 12 | 329 | 5 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_B | 2e-36 | 12 | 329 | 5 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778160 | 770 | 18 | 760 | 0 |
| DV168211 | 278 | 379 | 656 | 0 |
| FL805036 | 258 | 324 | 581 | 0 |
| FL816792 | 255 | 420 | 674 | 0 |
| DV021008 | 267 | 341 | 607 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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