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Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si013393m |
Family | PL4 |
Protein Properties | Length: 648 Molecular Weight: 73832.8 Isoelectric Point: 4.7194 |
Chromosome | Chromosome/Scaffold: 6 Start: 35479014 End: 35482706 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 17 | 630 | 0 |
GVRVKVSNRYVEIKNGIFELTLSNPDGIVTGVRYNGVDNLMEILNKEDNRGYWDLVWNPPGQKTGIFDVIKGTEFRIIYHDENQAEVSFTRNWDPSLEGK AVPLNIDKRFIVLRGSSGFYTYGIYEHKEGWPDFGLGETRVAFKLRKDKFHYMALADNRQRIMPMPDDRLPPRGQPLAYPEAVLLVDPINPDLRGEVDDK YQYSCEDQCNNVHGWMSFDPPIGFWQITPSDEFRTGGPLKQNLTSHVGPTTLAMFLSAHYAGDDLSPVFTNGEYWKKVHGPVFMYLNSSWDGSDPTMLWE DAKVQMMIEKESWPYSFALSEDFQKTEQRGCISGRLLVRDRYIDDEDLYASGAYVGLALPGEVGSWQRECKGYQFWCRADVDGSFYIRSIVTGNYNLYAW VPGFIGDYRLDATLTIASGDDIYLGDLVYEPPRDGPTMWEIGVPDRSAAEFYVPDPNPNYINRLYINHPDRFRQYGLWERYAELYPDSDLVYTIGQSDYS TDWFYAQVNRKVDDNTYQPTTWQIKFTLDSVSPGSTYKFRVALASSARAELQVFFNDQNRGVPHFATGLIGRDNAIARHGIHGLYWLFNINVDSAWLVQG MNTIYLKQPRNQSP |
Full Sequence |
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Protein Sequence Length: 648 Download |
MGPPSPAGAG AVDATDGVRV KVSNRYVEIK NGIFELTLSN PDGIVTGVRY NGVDNLMEIL 60 NKEDNRGYWD LVWNPPGQKT GIFDVIKGTE FRIIYHDENQ AEVSFTRNWD PSLEGKAVPL 120 NIDKRFIVLR GSSGFYTYGI YEHKEGWPDF GLGETRVAFK LRKDKFHYMA LADNRQRIMP 180 MPDDRLPPRG QPLAYPEAVL LVDPINPDLR GEVDDKYQYS CEDQCNNVHG WMSFDPPIGF 240 WQITPSDEFR TGGPLKQNLT SHVGPTTLAM FLSAHYAGDD LSPVFTNGEY WKKVHGPVFM 300 YLNSSWDGSD PTMLWEDAKV QMMIEKESWP YSFALSEDFQ KTEQRGCISG RLLVRDRYID 360 DEDLYASGAY VGLALPGEVG SWQRECKGYQ FWCRADVDGS FYIRSIVTGN YNLYAWVPGF 420 IGDYRLDATL TIASGDDIYL GDLVYEPPRD GPTMWEIGVP DRSAAEFYVP DPNPNYINRL 480 YINHPDRFRQ YGLWERYAEL YPDSDLVYTI GQSDYSTDWF YAQVNRKVDD NTYQPTTWQI 540 KFTLDSVSPG STYKFRVALA SSARAELQVF FNDQNRGVPH FATGLIGRDN AIARHGIHGL 600 YWLFNINVDS AWLVQGMNTI YLKQPRNQSP FQGLMYDYLR LEGPCGC* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-29 | 344 | 443 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-56 | 455 | 642 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-70 | 19 | 305 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-100 | 19 | 213 | 195 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD10227.1 | 0 | 3 | 647 | 4 | 645 | putative MYST1 [Oryza sativa Japonica Group] |
GenBank | EEE69123.1 | 0 | 3 | 642 | 663 | 1299 | hypothetical protein OsJ_28233 [Oryza sativa Japonica Group] |
RefSeq | NP_001062464.1 | 0 | 3 | 646 | 17 | 657 | Os08g0554100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001062465.1 | 0 | 1 | 647 | 1 | 606 | Os08g0554300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002445711.1 | 0 | 1 | 647 | 14 | 663 | hypothetical protein SORBIDRAFT_07g024560 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO843311 | 286 | 19 | 304 | 0 |
GO850432 | 277 | 19 | 295 | 0 |
FE632882 | 246 | 105 | 350 | 0 |
GO843500 | 255 | 394 | 648 | 0 |
GO850432 | 25 | 296 | 320 | 1.5 |
Sequence Alignments (This image is cropped. Click for full image.) |
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