y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si013472m |
Family | AA3 |
Protein Properties | Length: 585 Molecular Weight: 64416.5 Isoelectric Point: 9.027 |
Chromosome | Chromosome/Scaffold: 6 Start: 24848151 End: 24852329 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 48 | 577 | 0 |
EAYDYIIVGGGTAGCPLAATLSQKYKVLLLERGGSPYGNRNITLLENFHICLADVSPESPSQGFISTDGVINARAKVLGGGTCINAGFYSRAKPSFVQQA GWDEELVNQSYPWVEERIVHWPKVAPWQAALRDGLLEAGVSPYNGYTYDHLYGTKVGGTIFDETGYRHTAADLLAAGNPNNLRVLLYARVNKIVFNTKQG HRKPRAIGVQFKDENGRHHQAFLREKRGSEIIVSAGAIGSPQLLMLSGIGPRNELKKHNISVTLRNEHVGKGMSDNPMNSIFVPMKNPTKQSLIETVGIT DAGVFIEASSGFSQTDDSIHCHHGIMSAEIGQLSTIPPKKRSFDAIQKYVDNKYSLPKEVFDGGFILEKIDGPLSTGNLVLVDTDVDSNPSVTFNYFQHP KDLSRCVYGIKTIEKILKTNHFTNLTANGAGYPMETLLNMSVSANINLIPKHTDDTTSLEQFCRDTVTTIWHYHGGCHVGKVVDQQYRVIGISGLRVVDG STLFRSPGTNPQATVLMMGRYMGVKILRER |
Full Sequence |
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Protein Sequence Length: 585 Download |
MDLISRRVVF KALVFLCFIR SSQGRDHFTK LNLPTFLEAS RFPTFQYEAY DYIIVGGGTA 60 GCPLAATLSQ KYKVLLLERG GSPYGNRNIT LLENFHICLA DVSPESPSQG FISTDGVINA 120 RAKVLGGGTC INAGFYSRAK PSFVQQAGWD EELVNQSYPW VEERIVHWPK VAPWQAALRD 180 GLLEAGVSPY NGYTYDHLYG TKVGGTIFDE TGYRHTAADL LAAGNPNNLR VLLYARVNKI 240 VFNTKQGHRK PRAIGVQFKD ENGRHHQAFL REKRGSEIIV SAGAIGSPQL LMLSGIGPRN 300 ELKKHNISVT LRNEHVGKGM SDNPMNSIFV PMKNPTKQSL IETVGITDAG VFIEASSGFS 360 QTDDSIHCHH GIMSAEIGQL STIPPKKRSF DAIQKYVDNK YSLPKEVFDG GFILEKIDGP 420 LSTGNLVLVD TDVDSNPSVT FNYFQHPKDL SRCVYGIKTI EKILKTNHFT NLTANGAGYP 480 METLLNMSVS ANINLIPKHT DDTTSLEQFC RDTVTTIWHY HGGCHVGKVV DQQYRVIGIS 540 GLRVVDGSTL FRSPGTNPQA TVLMMGRYMG VKILRERLGR AAGV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 5.0e-27 | 48 | 309 | 319 | + choline dehydrogenase; Validated | ||
TIGR03970 | Rv0697 | 2.0e-29 | 51 | 566 | 552 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
TIGR01810 | betA | 1.0e-35 | 51 | 566 | 583 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 6.0e-44 | 50 | 582 | 591 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 5 | 584 | 590 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ08804.1 | 0 | 4 | 584 | 3 | 585 | hypothetical protein OsI_31066 [Oryza sativa Indica Group] |
RefSeq | NP_001061757.1 | 0 | 1 | 584 | 1 | 584 | Os08g0401500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001062996.1 | 0 | 4 | 584 | 3 | 585 | Os09g0363900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147913.1 | 0 | 1 | 584 | 1 | 580 | protein HOTHEAD [Zea mays] |
RefSeq | XP_002445466.1 | 0 | 1 | 584 | 1 | 584 | hypothetical protein SORBIDRAFT_07g019920 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ju2_B | 0 | 49 | 577 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 1ju2_A | 0 | 49 | 577 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_B | 0 | 49 | 577 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdp_A | 0 | 49 | 577 | 26 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3gdn_B | 0 | 49 | 577 | 26 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |