| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si013672m |
| Family | GT9 |
| Protein Properties | Length: 477 Molecular Weight: 52416.7 Isoelectric Point: 6.9851 |
| Chromosome | Chromosome/Scaffold: 6 Start: 12821729 End: 12824836 |
| Description | NDH-dependent cyclic electron flow 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT9 | 200 | 447 | 5.9e-22 |
| LKNRYYDLILSTRLAGIGHALFLFMSSSRDKVGYVYPNVNSVGAGLFLNEMFKAPTTNLSDGGYHMYTEMLEWIGRPAKNVPRQPTPPLRVSISKKLRAY VEGKYSRAGVEKGKYVVVHGIASDSVASMKSRGDDDCLLPLEHWAQIAKEISSDDKGLKPLFVIPHEKHREEIEEEVGEDTNILFLTTPGQLTCLINDSA GVVATNTAAVQLANARDKPCVALFSSAEKAKLFLPYVEDKGSCTVIAS | |||
| Full Sequence |
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| Protein Sequence Length: 477 Download |
| MQTPAMSTSM AATPTTTRAV APAPAAKSPA PRQYCNHLLP SATSHRRRRG SVVARSAKKR 60 NPWLDPFDDG PDEEFDYQGM FAGGKQEEDP RPPEDPANPY GFLRFPQGYN PELDSLASKV 120 RGDVRRACCV VSGGVYENVL FFPVVQMLKD RYPGVLIDVV TSARGKQVYE MCKNVRYATV 180 YDPDDDWPEP AEYTHQLGIL KNRYYDLILS TRLAGIGHAL FLFMSSSRDK VGYVYPNVNS 240 VGAGLFLNEM FKAPTTNLSD GGYHMYTEML EWIGRPAKNV PRQPTPPLRV SISKKLRAYV 300 EGKYSRAGVE KGKYVVVHGI ASDSVASMKS RGDDDCLLPL EHWAQIAKEI SSDDKGLKPL 360 FVIPHEKHRE EIEEEVGEDT NILFLTTPGQ LTCLINDSAG VVATNTAAVQ LANARDKPCV 420 ALFSSAEKAK LFLPYVEDKG SCTVIASATG KLIDIDIEAV KKAVKDFEPA PSFALA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd03789 | GT1_LPS_heptosyltransferase | 6.0e-5 | 139 | 233 | 95 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
| COG0859 | RfaF | 2.0e-23 | 124 | 472 | 360 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC83246.1 | 0 | 6 | 476 | 1 | 460 | hypothetical protein OsI_28562 [Oryza sativa Indica Group] |
| GenBank | EEE68378.1 | 0 | 6 | 476 | 1 | 424 | hypothetical protein OsJ_26704 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061432.1 | 0 | 1 | 476 | 1 | 467 | Os08g0276100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001142788.1 | 0 | 1 | 476 | 1 | 464 | hypothetical protein LOC100275158 [Zea mays] |
| RefSeq | XP_002332075.1 | 0 | 10 | 468 | 1 | 459 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EC878039 | 272 | 94 | 365 | 0 |
| EE170514 | 272 | 94 | 365 | 0 |
| EE026840 | 268 | 93 | 360 | 0 |
| EE046780 | 269 | 94 | 362 | 0 |
| EE047586 | 264 | 94 | 357 | 0 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Malus domestica | MDP0000821000 | ||||
| Oryza sativa | LOC_Os08g17390.1 | ||||
| Panicum virgatum | Pavirv00029492m | Pavirv00049966m | |||
| Ricinus communis | 30131.m006851 | ||||
| Sorghum bicolor | Sb07g016320.2 | Sb07g016320.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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