| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si013945m |
| Family | PL1 |
| Protein Properties | Length: 373 Molecular Weight: 40452.1 Isoelectric Point: 10.5961 |
| Chromosome | Chromosome/Scaffold: 6 Start: 14878034 End: 14879346 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 97 | 295 | 0 |
| ITFQRGMHIRLVQPLFVKSFTVIDGRGADVHIAGGAGIMLYQVSNVIIHGLHIHDCRSQPTGQVVVPGGAVRPAGGMDGDAIRLVSSTKVWIDHNTLSRS EDGLLDVTVGSTDVTVSNNWFLNHDKVMLLGHDDGHAADRRMRVTVAFNRFGPNVNQRMPRIRHGYAHVVNNLYDGWVQYAIGGSMGPSVKSQGNLFVA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 373 Download |
| MASKEFLLLA FLFVLHGAMT NVHGANIIDR CWRRQRNWAA NRQRLAVCSV GFAGKMRQNR 60 GPGVIPYTVT DPGDDPVRPG PGTLRYGATV LPGKVWITFQ RGMHIRLVQP LFVKSFTVID 120 GRGADVHIAG GAGIMLYQVS NVIIHGLHIH DCRSQPTGQV VVPGGAVRPA GGMDGDAIRL 180 VSSTKVWIDH NTLSRSEDGL LDVTVGSTDV TVSNNWFLNH DKVMLLGHDD GHAADRRMRV 240 TVAFNRFGPN VNQRMPRIRH GYAHVVNNLY DGWVQYAIGG SMGPSVKSQG NLFVASGADN 300 KKVTRRMPVG GKDWDWASIG DSFQNGAFFK QTGSRVRPNY NKHQAFAAAS ANEVRSLTKD 360 AGALSCKAGS AC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-23 | 113 | 363 | 271 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-51 | 115 | 293 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-61 | 108 | 297 | 199 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD01325.1 | 0 | 25 | 372 | 27 | 384 | putative Cup s 1 pollen allergen [Oryza sativa Japonica Group] |
| GenBank | EAZ06386.1 | 0 | 25 | 372 | 27 | 384 | hypothetical protein OsI_28615 [Oryza sativa Indica Group] |
| RefSeq | XP_002267384.1 | 0 | 10 | 372 | 4 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 26 | 372 | 2 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002458626.1 | 0 | 1 | 372 | 1 | 373 | hypothetical protein SORBIDRAFT_03g036930 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 26 | 365 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 26 | 365 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-21 | 125 | 338 | 77 | 294 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 5e-20 | 111 | 293 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000000001 | 93 | 296 | 61 | 279 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
