Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si015123m |
Family | CE8 |
Protein Properties | Length: 399 Molecular Weight: 43585.8 Isoelectric Point: 4.8453 |
Chromosome | Chromosome/Scaffold: 6 Start: 1948448 End: 1950003 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 92 | 384 | 0 |
CVDPNGCCDFTTVQAAVDAIPNHSRKRNVVWINKGIYFEKVTVPSSKPNITFQGQGFDMTAIAWNDTAKSANGTFYSASVSIFASGFVAKNISFMNVAPI PRPGAVDAQALAIRINGDQAAFWGCGFFGAQDTLHDDRGRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPVPSGQRSITGSVTAHARVSEDDNTGY SFVHCSIGGTGWIWLGRAWRPYSRVVFAYTSMSDIIASEGWNDWNDPSRDQTVFYGEYKCTGDGANLADRVPYAQKLSDVQVLPFLSTSFIDG |
Full Sequence |
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Protein Sequence Length: 399 Download |
MSTQINASAT FVAAFLVFSA HLYFPTTAHL FSPAMPLLGA LSDLIEPSFP FCPLTFSSAS 60 TDHQYGCQYN PLCDNFPPDF PPPDTPAVSV FCVDPNGCCD FTTVQAAVDA IPNHSRKRNV 120 VWINKGIYFE KVTVPSSKPN ITFQGQGFDM TAIAWNDTAK SANGTFYSAS VSIFASGFVA 180 KNISFMNVAP IPRPGAVDAQ ALAIRINGDQ AAFWGCGFFG AQDTLHDDRG RHYFKECFIQ 240 GSIDFIFGDA RSLYENCRLI SIADPVPSGQ RSITGSVTAH ARVSEDDNTG YSFVHCSIGG 300 TGWIWLGRAW RPYSRVVFAY TSMSDIIASE GWNDWNDPSR DQTVFYGEYK CTGDGANLAD 360 RVPYAQKLSD VQVLPFLSTS FIDGDQWLKP YSDSLIST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-99 | 90 | 389 | 308 | + pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-105 | 88 | 390 | 310 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-120 | 93 | 390 | 299 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-129 | 100 | 390 | 297 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 25 | 393 | 379 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 72 | 389 | 71 | 388 | Pectinesterase [Medicago truncatula] |
GenBank | EEC83093.1 | 0 | 27 | 397 | 20 | 393 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 28 | 397 | 146 | 518 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_002445213.1 | 0 | 1 | 397 | 3 | 398 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
RefSeq | XP_002521065.1 | 0 | 72 | 392 | 75 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 92 | 389 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3.00018e-42 | 92 | 389 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-16 | 101 | 382 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-16 | 101 | 382 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-16 | 101 | 382 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |