| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si015137m |
| Family | GH28 |
| Protein Properties | Length: 425 Molecular Weight: 43742.9 Isoelectric Point: 7.1759 |
| Chromosome | Chromosome/Scaffold: 6 Start: 34810374 End: 34811966 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 375 | 0 |
| AACGSTAGNSTLLFPKGTFAAGAVQFEGPCRNGDAPVVVIDGVLQPCAGGSGGGCRLSDDAWITFSGLNNLLVTGAGTLDGQGHHQSGKAKSKTTTLVFD GVTNSTLRGLRLVNSRGFHVNLRRCTRVVAEGLGIHAPAASRNTDGVHVGLSSHVRILNSVIGTGDDCVSVGPGSTDVVVRGVACGPGHGLSVGSLGKDG GEQDVVRGLVIENCTVTGTTNGVRIKTWAGSPPGAASNIKFQDITMDNVSNPIIIDQRYCPHDHCSDADKISDVTFRRIEGTSSTPLAVQLLCSEDRPCT GVRLDGINLTCGDVPCRSEFSNV | |||
| Full Sequence |
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| Protein Sequence Length: 425 Download |
| FCCTLHTPNL LTGGNARGKD QAASVFDVTE YGAAPSNRDN RDASAAFLAA WRAACGSTAG 60 NSTLLFPKGT FAAGAVQFEG PCRNGDAPVV VIDGVLQPCA GGSGGGCRLS DDAWITFSGL 120 NNLLVTGAGT LDGQGHHQSG KAKSKTTTLV FDGVTNSTLR GLRLVNSRGF HVNLRRCTRV 180 VAEGLGIHAP AASRNTDGVH VGLSSHVRIL NSVIGTGDDC VSVGPGSTDV VVRGVACGPG 240 HGLSVGSLGK DGGEQDVVRG LVIENCTVTG TTNGVRIKTW AGSPPGAASN IKFQDITMDN 300 VSNPIIIDQR YCPHDHCSDA DKISDVTFRR IEGTSSTPLA VQLLCSEDRP CTGVRLDGIN 360 LTCGDVPCRS EFSNVRGPLA PAPAVAQAQA PSPAPAASRR EEAADAASEQ LGRSTWWSPF 420 TVRG* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-63 | 23 | 361 | 346 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 9.0e-66 | 57 | 370 | 329 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-69 | 57 | 361 | 320 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-85 | 55 | 365 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-91 | 1 | 376 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD62225.1 | 0 | 4 | 410 | 9 | 424 | putative Exopolygalacturonase precursor [Oryza sativa Japonica Group] |
| GenBank | EAZ01129.1 | 0 | 4 | 410 | 9 | 412 | hypothetical protein OsI_23157 [Oryza sativa Indica Group] |
| GenBank | EEE65794.1 | 0 | 4 | 410 | 9 | 424 | hypothetical protein OsJ_21499 [Oryza sativa Japonica Group] |
| RefSeq | XP_002272193.1 | 0 | 13 | 361 | 43 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002444632.1 | 0 | 13 | 376 | 23 | 383 | hypothetical protein SORBIDRAFT_07g025130 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-23 | 103 | 362 | 95 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 7e-19 | 115 | 364 | 71 | 334 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 5e-18 | 115 | 370 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 5e-18 | 115 | 370 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 5e-18 | 115 | 370 | 63 | 335 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DR734786 | 205 | 55 | 258 | 0 |
| FL781921 | 254 | 113 | 353 | 0 |
| EH772281 | 287 | 106 | 376 | 0 |
| GR451013 | 260 | 114 | 361 | 0 |
| GR451669 | 260 | 114 | 361 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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