| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si015477m |
| Family | GH28 |
| Protein Properties | Length: 397 Molecular Weight: 42161.6 Isoelectric Point: 8.9159 |
| Chromosome | Chromosome/Scaffold: 6 Start: 18312821 End: 18314326 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 385 | 0 |
| AWKAACATAGAVTMVVPAGTYYLGPVQFHGPCKASTLTFQLQAITTSLCLGTLKAATDLKRFGNDWIEFGWVNGLTVAGGVIDGQGAASWPFNKCPVRKD CKVLPTSVLFVNNQNTVVRDLTSVNPKFFHIALLSVKNIKMSGLKITAPSNSPNTDGIHIERSAGVSITDTHIATGDDCISVGQGNDNVEVARVQCGPGH GMSVGSLGRYAGEGDVTRVHIRDMTFTGTMNGVRIKTWENSPTKSNAAHMVFENLVMNDVQNPIIIDQKYCPYYNCEHKYVSGVTIKDIQFKNIKGTVTT PVAVMLRCGVPCQGLVLQDVHLKYKGQGTASAKCENAKAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 397 Download |
| MEARLALIVV ALLASASAGA GNVVNVKNYG AKGNGVNDDT KPLMTAWKAA CATAGAVTMV 60 VPAGTYYLGP VQFHGPCKAS TLTFQLQAIT TSLCLGTLKA ATDLKRFGND WIEFGWVNGL 120 TVAGGVIDGQ GAASWPFNKC PVRKDCKVLP TSVLFVNNQN TVVRDLTSVN PKFFHIALLS 180 VKNIKMSGLK ITAPSNSPNT DGIHIERSAG VSITDTHIAT GDDCISVGQG NDNVEVARVQ 240 CGPGHGMSVG SLGRYAGEGD VTRVHIRDMT FTGTMNGVRI KTWENSPTKS NAAHMVFENL 300 VMNDVQNPII IDQKYCPYYN CEHKYVSGVT IKDIQFKNIK GTVTTPVAVM LRCGVPCQGL 360 VLQDVHLKYK GQGTASAKCE NAKAKYVGVQ LPKPCP* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-69 | 38 | 395 | 370 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 3.0e-72 | 38 | 393 | 366 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 5.0e-75 | 62 | 395 | 339 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-92 | 62 | 383 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 0 | 38 | 396 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ62998.1 | 0 | 25 | 395 | 30 | 398 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
| GenBank | EEE68484.1 | 0 | 1 | 396 | 1 | 389 | hypothetical protein OsJ_26895 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061556.1 | 0 | 1 | 396 | 1 | 407 | Os08g0327200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002437842.1 | 0 | 24 | 395 | 31 | 394 | hypothetical protein SORBIDRAFT_10g003580 [Sorghum bicolor] |
| RefSeq | XP_002444237.1 | 0 | 20 | 396 | 22 | 391 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-16 | 125 | 334 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000000002 | 58 | 381 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000002 | 58 | 381 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000002 | 58 | 381 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000000002 | 58 | 381 | 25 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
