| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si016380m |
| Family | AA3 |
| Protein Properties | Length: 774 Molecular Weight: 82296.5 Isoelectric Point: 7.0771 |
| Chromosome | Chromosome/Scaffold: 1 Start: 31579121 End: 31582771 |
| Description | Long-chain fatty alcohol dehydrogenase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA3 | 255 | 769 | 1.26117e-44 |
| VECDVVIVGSGCGGGVSAAVLAGAGYKVVVIEKGSYFTARDYTAVEAPSMEQLYEGGGFVSTLSGGALILAGSAVGGGTAVNWSACIKTPDEVRAEWARD QGIPLFATDEYAAAMDRVFERLGVTHGCNEEGLQNKVLRKGCEKLGYKVESVSRNSSEGHYCGSCGFGCRTGDKRGTDTTWLVDAVSHGAVILTGCKAEK LLLMERAGTGGADGRAKRCAGVVARSTNPAVTRTLEVRARATVSACGSLLTPVLLRGSGLSNRHIGKNLHLHPTALVWGYFPESTTAEPDLKGKMYEGGI ITSLHKVEGPPGAPARAILETPAMGLAAAGTQFPWVSGRDMKERMLRYGRTVHLFSLVRDRGSGTVHGERRVAYHLDAADREDMREGLRRALRVLAAAGA AEIGTHRSDGQRFVCRGATEAALEEFLDGVDVVRGPKSKAEAWSLFCTAHQMGSCRMGATAADGAVDARGESWEAQRLYVCDGSVLPSAVGVNPMVTIQS VAYCLATGIAESLRR | |||
| Full Sequence |
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| Protein Sequence Length: 774 Download |
| MVAGEKRGHP LLRGGGARRE RYTHGFSSSQ MAALTALCGA LVPSLPPPVS RNGHHPEEDG 60 GPGGGERGGN KVVEEFLLAS AADPPVPDEV AELMSRRCLP EALALVRAVL WLLGTRLGAL 120 ALCGARCLSW RFPFVRRFAE LPPEEREGAM QRWSRQTLLP PLRIFFLITK VFCLYVFYSW 180 TDENSENPHW RATGYSPPLA DEEHAAAAEE GRPEKRPLDD GVVETTNETD ASLAASLAAK 240 GLAVTEDAAR NVCTVECDVV IVGSGCGGGV SAAVLAGAGY KVVVIEKGSY FTARDYTAVE 300 APSMEQLYEG GGFVSTLSGG ALILAGSAVG GGTAVNWSAC IKTPDEVRAE WARDQGIPLF 360 ATDEYAAAMD RVFERLGVTH GCNEEGLQNK VLRKGCEKLG YKVESVSRNS SEGHYCGSCG 420 FGCRTGDKRG TDTTWLVDAV SHGAVILTGC KAEKLLLMER AGTGGADGRA KRCAGVVARS 480 TNPAVTRTLE VRARATVSAC GSLLTPVLLR GSGLSNRHIG KNLHLHPTAL VWGYFPESTT 540 AEPDLKGKMY EGGIITSLHK VEGPPGAPAR AILETPAMGL AAAGTQFPWV SGRDMKERML 600 RYGRTVHLFS LVRDRGSGTV HGERRVAYHL DAADREDMRE GLRRALRVLA AAGAAEIGTH 660 RSDGQRFVCR GATEAALEEF LDGVDVVRGP KSKAEAWSLF CTAHQMGSCR MGATAADGAV 720 DARGESWEAQ RLYVCDGSVL PSAVGVNPMV TIQSVAYCLA TGIAESLRRD PAF* 780 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 0.005 | 704 | 756 | 54 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| pfam05199 | GMC_oxred_C | 9.0e-17 | 702 | 759 | 58 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| COG2303 | BetA | 4.0e-20 | 326 | 765 | 473 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam00732 | GMC_oxred_N | 6.0e-81 | 304 | 528 | 228 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27562.1 | 0 | 5 | 771 | 6 | 763 | unknown [Zea mays] |
| RefSeq | NP_001047464.1 | 0 | 6 | 767 | 11 | 765 | Os02g0621800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148058.1 | 0 | 5 | 771 | 6 | 763 | oxidoreductase [Zea mays] |
| RefSeq | XP_002454188.1 | 0 | 1 | 771 | 1 | 767 | hypothetical protein SORBIDRAFT_04g026370 [Sorghum bicolor] |
| RefSeq | XP_002454190.1 | 0 | 1 | 769 | 1 | 772 | hypothetical protein SORBIDRAFT_04g026390 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2gew_A | 0.0003 | 700 | 756 | 439 | 489 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
| PDB | 1n4w_A | 0.0003 | 700 | 756 | 439 | 489 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
| PDB | 1n4v_A | 0.0003 | 700 | 756 | 439 | 489 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
| PDB | 1n4u_A | 0.0003 | 700 | 756 | 439 | 489 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
| PDB | 1n1p_A | 0.0003 | 700 | 756 | 439 | 489 | A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO794753 | 639 | 129 | 767 | 0 |
| HO779224 | 456 | 227 | 682 | 0 |
| EE016105 | 234 | 301 | 534 | 0 |
| EE031505 | 258 | 255 | 512 | 0 |
| CB676542 | 258 | 322 | 578 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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