| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si016492m |
| Family | GT5 |
| Protein Properties | Length: 707 Molecular Weight: 76577.3 Isoelectric Point: 6.5133 |
| Chromosome | Chromosome/Scaffold: 1 Start: 37894927 End: 37899530 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 216 | 699 | 0 |
| NVVVVASECAPFCKTGGLGDVVGALPKALARRGHRVMVVIPRYGEYAEARDLGVRRRYRVAGQDSEVTYFHSYIDGVDFVFIEAPPFRHRHNDIYGGERL DVLKRMILFCKAAVEVPWYAPCGGTVYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYARSVLVIHNIAHQGRGPVDDFFNFDLPEHYIDHFKLYDPV GGDHSNVFAAGLKMADRVVTVSRGYLWELRTSEGGWGLHDIINQNDWKLDGIVNGIDMSEWNPAVDVHLHSDDYTNYTFETLDTGKRQCKAALQRQLGLQ VRDDVPLIGFIGRLDHQKGVDIIADAIHWIAGQDVQLVMLGTGRPDLEEMLRRCEAEHGDKVRAWVGFSVPMAHRITAGADVLLMPSRFEPCGLNQLYAM AYGTVPVVHAVGGLRDTVAPFDPFADAGLGWTFDRAEANRMIDALGHCLNTYRNYKESWRGLQARGMAQDLSWDHAAELYEDVL | |||
| Full Sequence |
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| Protein Sequence Length: 707 Download |
| MSGAIASSSS AFLLLVASSS PRRRRSRVGA ALRSYRYSYG GAELRLHWTR RGLLRNGAAV 60 VRAAAEPAGG EGEEAAAAGE SSTPKGVTVQ GSKAKAAGSA PPPKPVTSAP KQRHSAAKQN 120 GALGSSSASK PGAPASEPIA ESTAPVSERT ETETDASAKV EEPKPTALDD AKESVGIAEP 180 VEAKAGAAVA ADAATSAADG SEDKEPGPLA GPNVMNVVVV ASECAPFCKT GGLGDVVGAL 240 PKALARRGHR VMVVIPRYGE YAEARDLGVR RRYRVAGQDS EVTYFHSYID GVDFVFIEAP 300 PFRHRHNDIY GGERLDVLKR MILFCKAAVE VPWYAPCGGT VYGDGNLVFI ANDWHTALLP 360 VYLKAYYRDN GLMQYARSVL VIHNIAHQGR GPVDDFFNFD LPEHYIDHFK LYDPVGGDHS 420 NVFAAGLKMA DRVVTVSRGY LWELRTSEGG WGLHDIINQN DWKLDGIVNG IDMSEWNPAV 480 DVHLHSDDYT NYTFETLDTG KRQCKAALQR QLGLQVRDDV PLIGFIGRLD HQKGVDIIAD 540 AIHWIAGQDV QLVMLGTGRP DLEEMLRRCE AEHGDKVRAW VGFSVPMAHR ITAGADVLLM 600 PSRFEPCGLN QLYAMAYGTV PVVHAVGGLR DTVAPFDPFA DAGLGWTFDR AEANRMIDAL 660 GHCLNTYRNY KESWRGLQAR GMAQDLSWDH AAELYEDVLV KAKYQW* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 1.0e-85 | 215 | 695 | 501 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 1.0e-135 | 215 | 697 | 491 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 9.0e-170 | 215 | 699 | 497 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 215 | 702 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 216 | 699 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC86845.1 | 0 | 12 | 706 | 12 | 704 | starch synthase IIb precursor [Sorghum bicolor] |
| GenBank | ACN31779.1 | 0 | 1 | 706 | 1 | 698 | unknown [Zea mays] |
| RefSeq | NP_001104880.1 | 0 | 1 | 706 | 1 | 698 | starch synthase isoform zSTSII-2 [Zea mays] |
| RefSeq | NP_001106014.1 | 0 | 28 | 706 | 29 | 704 | starch synthase IIb-2 precursor [Zea mays] |
| RefSeq | XP_002452556.1 | 0 | 12 | 706 | 12 | 704 | hypothetical protein SORBIDRAFT_04g028060 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 215 | 700 | 10 | 509 | A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 |
| PDB | 3vue_A | 0 | 215 | 700 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 215 | 703 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 215 | 705 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 215 | 705 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 389 | 707 | 0 |
| HO777841 | 195 | 202 | 396 | 0 |
| HO781048 | 394 | 314 | 707 | 0 |
| HO445868 | 438 | 270 | 707 | 0 |
| HO781048 | 38 | 277 | 314 | 2.7 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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