| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si016984m |
| Family | GH28 |
| Protein Properties | Length: 502 Molecular Weight: 54504.1 Isoelectric Point: 9.4359 |
| Chromosome | Chromosome/Scaffold: 1 Start: 39743914 End: 39746890 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 114 | 463 | 0 |
| ERGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAEILGIPYEKYWPLMPALPSYGYGRERKGPCFGSLIHGQNLKDVVITGHNGSINGQGEVWWMKHRRRM LNNTRPPLVQLMWSKDIIVANITLRNSPFWHFHPYDCTNVTVSNVTILSPISGAPNTDGIDPDSCQDVLIENCYISVGDDAIAVKSGWDQYGIAYGRPSS NILIRNVTARSLVSAGISIGSEMSGGVANVTVENVRVWESRRGVRIKTATGRGGYIRNITYRNITFDNVRAGIVIKVDYNEHADDGYDRTAFPDITSISF KGIHGRGVRVPVRAHGSDVIPIKDISFQDMSVGISYKKKHIFQCSYVKGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 502 Download |
| MVETAGGRLH QRRGAAAFIA ANKTLLTAAW VVGFTLVFLW QSASISLGSG GAGGGGSGGV 60 FLRLLSAPLP PSRPAPRLRP TAYNLTDFGG VGDGRALNTE AFERAVEAIA ALAERGGGQL 120 NVPPGRWLTA PFNLTSHMTL FLAEGAEILG IPYEKYWPLM PALPSYGYGR ERKGPCFGSL 180 IHGQNLKDVV ITGHNGSING QGEVWWMKHR RRMLNNTRPP LVQLMWSKDI IVANITLRNS 240 PFWHFHPYDC TNVTVSNVTI LSPISGAPNT DGIDPDSCQD VLIENCYISV GDDAIAVKSG 300 WDQYGIAYGR PSSNILIRNV TARSLVSAGI SIGSEMSGGV ANVTVENVRV WESRRGVRIK 360 TATGRGGYIR NITYRNITFD NVRAGIVIKV DYNEHADDGY DRTAFPDITS ISFKGIHGRG 420 VRVPVRAHGS DVIPIKDISF QDMSVGISYK KKHIFQCSYV KGRVIGSVFP KPCENLDVYN 480 EQGQLVKRAI SLNSTELDYD I* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-29 | 81 | 392 | 322 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-29 | 87 | 473 | 401 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-36 | 82 | 445 | 375 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-43 | 172 | 461 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 9.0e-68 | 81 | 435 | 393 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAY87758.1 | 0 | 1 | 489 | 1 | 506 | hypothetical protein OsI_09176 [Oryza sativa Indica Group] |
| RefSeq | NP_001140630.1 | 0 | 1 | 501 | 1 | 495 | hypothetical protein LOC100272705 [Zea mays] |
| RefSeq | XP_002326133.1 | 0 | 8 | 501 | 17 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002452925.1 | 0 | 1 | 501 | 1 | 500 | hypothetical protein SORBIDRAFT_04g035020 [Sorghum bicolor] |
| RefSeq | XP_002516244.1 | 0 | 1 | 501 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 76 | 442 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 76 | 442 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 76 | 442 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 76 | 442 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-23 | 127 | 447 | 52 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
