| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si017201m |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 48110.6 Isoelectric Point: 9.4429 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1158364 End: 1162724 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 76 | 421 | 0 |
| RRRGGTELRVPAGTWLTGSFNLTSHMTLFLARGAVLMATGDTRGWPLVEPLPSYGRGRELPGPRYASFITGDGLRDVVITGDKGVIDGQGEVWWNMWRRR TLQHTRPNLVEFMHSTGIHISNIVLKNSPFWNIHPVYCENVVVTNMMILAPHDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAIKSGWDEYGIAYGRPSS GITIRRVRGSSPFSGIAIGSEASGGVRDVLVEDCSIFDSGYGIHIKTSVGRGGYIRNVTVDNVRMSRVRSGVRIAGDAGDHPDGRFSQRAVPMVDAVRIR NVWGVGIQQPGSLEGIRNSPFTRICLDNVKLFGWRTGAAWRCRDVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MAAPSSRGSS LAVFVVLLGA LALLQSAAGA ATCVGVAPAK RRPEVISITD FGGVGDGRTL 60 NTWAFRKAVY RIQHQRRRGG TELRVPAGTW LTGSFNLTSH MTLFLARGAV LMATGDTRGW 120 PLVEPLPSYG RGRELPGPRY ASFITGDGLR DVVITGDKGV IDGQGEVWWN MWRRRTLQHT 180 RPNLVEFMHS TGIHISNIVL KNSPFWNIHP VYCENVVVTN MMILAPHDSP NTDGVDPDSS 240 SNVCIEDSYI STGDDLVAIK SGWDEYGIAY GRPSSGITIR RVRGSSPFSG IAIGSEASGG 300 VRDVLVEDCS IFDSGYGIHI KTSVGRGGYI RNVTVDNVRM SRVRSGVRIA GDAGDHPDGR 360 FSQRAVPMVD AVRIRNVWGV GIQQPGSLEG IRNSPFTRIC LDNVKLFGWR TGAAWRCRDV 420 RGAALGVQPW PCAELATSFA SAGGSCG* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 7.0e-22 | 37 | 439 | 431 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-30 | 46 | 442 | 416 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-30 | 41 | 408 | 384 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-32 | 143 | 420 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-50 | 45 | 360 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN33336.1 | 0 | 1 | 446 | 1 | 450 | unknown [Zea mays] |
| GenBank | ACN36471.1 | 0 | 101 | 446 | 1 | 346 | unknown [Zea mays] |
| GenBank | EAY85246.1 | 0 | 27 | 441 | 24 | 438 | hypothetical protein OsI_06620 [Oryza sativa Indica Group] |
| RefSeq | NP_001046468.1 | 0 | 27 | 441 | 24 | 438 | Os02g0256100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002451891.1 | 0 | 32 | 446 | 31 | 447 | hypothetical protein SORBIDRAFT_04g009310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99993e-41 | 41 | 410 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99993e-41 | 41 | 410 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99993e-41 | 41 | 410 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99993e-41 | 41 | 410 | 19 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 1e-19 | 36 | 349 | 147 | 496 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
