y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si017418m |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 41797.7 Isoelectric Point: 8.3582 |
Chromosome | Chromosome/Scaffold: 1 Start: 4768873 End: 4770255 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 67 | 388 | 0 |
KNACDATGTHKIVIPAGNYLTGALELKGPCKSSIIIRLDGNLLGTGDLGAYKKNWIEIQNVDNFQINGHGTIDGQGPLVWKKNECQKSYNCKILPNIRGI TLLNSKFFHMNIYSSENVVVDKVTIKAPGDSPNTDGIHIGDSTNVTISGTTIGTGDDCISIGPGSKAIRVHGVRCGPGHGISVGSLGRYKDEKDVEDVKV TDCTLVGTSNGLRIKSYEDSKSSPKASKFLYEGVTMDNVSYPIIIDQKYCPNNICVKSGASKVAVSDVVFKNIHGTSNTPEAITLNCANNLPCQGVQLVN VDIKYNRSNNKTMSVCRNAAGK |
Full Sequence |
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Protein Sequence Length: 400 Download |
MAAVAAAVVA ALLAAPPALA NKAPQEVAVP ADGGAPSVPA GPLDIVHLGA KGDGKSDSTQ 60 AILKAWKNAC DATGTHKIVI PAGNYLTGAL ELKGPCKSSI IIRLDGNLLG TGDLGAYKKN 120 WIEIQNVDNF QINGHGTIDG QGPLVWKKNE CQKSYNCKIL PNIRGITLLN SKFFHMNIYS 180 SENVVVDKVT IKAPGDSPNT DGIHIGDSTN VTISGTTIGT GDDCISIGPG SKAIRVHGVR 240 CGPGHGISVG SLGRYKDEKD VEDVKVTDCT LVGTSNGLRI KSYEDSKSSP KASKFLYEGV 300 TMDNVSYPII IDQKYCPNNI CVKSGASKVA VSDVVFKNIH GTSNTPEAIT LNCANNLPCQ 360 GVQLVNVDIK YNRSNNKTMS VCRNAAGKSI GVAKELACL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 5.0e-62 | 49 | 399 | 369 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 8.0e-65 | 43 | 399 | 373 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-66 | 49 | 381 | 352 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-82 | 70 | 385 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-101 | 27 | 391 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD25264.1 | 0 | 37 | 399 | 49 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
GenBank | EEC72677.1 | 0 | 94 | 399 | 68 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
RefSeq | NP_001046194.1 | 0 | 37 | 399 | 76 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141808.1 | 0 | 33 | 399 | 41 | 418 | hypothetical protein LOC100273946 [Zea mays] |
RefSeq | XP_002451722.1 | 0 | 34 | 399 | 86 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 129 | 369 | 110 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 1e-19 | 74 | 384 | 46 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 1e-19 | 74 | 384 | 46 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 1e-19 | 74 | 384 | 46 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 1e-18 | 67 | 315 | 15 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |