Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si017681m |
Family | CBM43 |
Protein Properties | Length: 347 Molecular Weight: 35821.9 Isoelectric Point: 5.064 |
Chromosome | Chromosome/Scaffold: 1 Start: 39317430 End: 39320671 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 262 | 342 | 2.5e-30 |
WCVANAAVGEQRLLAALNYACGEGGANCKDIQPGAACFEPNTMVAHASYAFNDYFQRKGRTIGTCDFAGAAYVVNQAPSSG | |||
GH17 | 1 | 213 | 0 |
MVNVHAALARLGLDKAVKVSSPVALTALANSYPSSAGVFREDLAQPVMKPMLDFLAQTGSYLMVNAYPFFAYSANAGDISLDYALFRPNAGVQDAGNGLK YYSLLDAQLDAVFAAVNRLGNYNGVRVVVSETGWPSKGDASEVGASPANAAAYNGNLARRVLSGNAGTPLRPNADMDVYLFALFNENQKPGPTSERNYGV FYPNQQKVYDVEF |
Full Sequence |
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Protein Sequence Length: 347 Download |
MVNVHAALAR LGLDKAVKVS SPVALTALAN SYPSSAGVFR EDLAQPVMKP MLDFLAQTGS 60 YLMVNAYPFF AYSANAGDIS LDYALFRPNA GVQDAGNGLK YYSLLDAQLD AVFAAVNRLG 120 NYNGVRVVVS ETGWPSKGDA SEVGASPANA AAYNGNLARR VLSGNAGTPL RPNADMDVYL 180 FALFNENQKP GPTSERNYGV FYPNQQKVYD VEFVLGAGGA AGGGSQGNGG LGWQENGGPS 240 SGSGSTSGNP PSGVKVTTGE AWCVANAAVG EQRLLAALNY ACGEGGANCK DIQPGAACFE 300 PNTMVAHASY AFNDYFQRKG RTIGTCDFAG AAYVVNQAPS SGLQAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 55 | 204 | 153 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-18 | 262 | 333 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-33 | 262 | 342 | 81 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-68 | 1 | 213 | 213 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF79018.1 | 0 | 1 | 342 | 138 | 473 | unknown [Zea mays] |
GenBank | ACF88240.1 | 0 | 1 | 342 | 138 | 473 | unknown [Zea mays] |
GenBank | ACR35980.1 | 0 | 1 | 343 | 138 | 474 | unknown [Zea mays] |
RefSeq | NP_001136613.1 | 0 | 1 | 342 | 138 | 473 | hypothetical protein LOC100216736 [Zea mays] |
RefSeq | XP_002454630.1 | 0 | 1 | 342 | 139 | 483 | hypothetical protein SORBIDRAFT_04g034530 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 1 | 213 | 109 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 7.9874e-44 | 17 | 213 | 122 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 7.9874e-44 | 17 | 213 | 122 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 2.00386e-43 | 1 | 213 | 113 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 2.00386e-43 | 1 | 213 | 113 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG379052 | 291 | 31 | 321 | 0 |
DV519238 | 289 | 55 | 342 | 0 |
EC889464 | 284 | 1 | 283 | 0 |
DR797640 | 278 | 52 | 328 | 0 |
DR785352 | 280 | 64 | 342 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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