Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si019219m |
Family | CE8 |
Protein Properties | Length: 326 Molecular Weight: 34897.5 Isoelectric Point: 6.019 |
Chromosome | Chromosome/Scaffold: 1 Start: 34917562 End: 34918929 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 43 | 275 | 0 |
CVDKSGCCNYTTVQAAVDAVPDNSQKRTIVWINAGIYVEKVTLKKPNVTFQVQGMKATTIVWNDTANFAKGTRNSASVHIDAPGFVAKNISFKVIFPPAP KPGTEGAQAVAIRISGDKAAFSGCGFFGAQDTLLDEQHRHYFKECFIEGSVDFIFGDGRSLYENSTLNSVAEELPQGQHSINGAITAQARQFPENNTGFS FIGCTIQGTGWILLGRAWQAYSRVVFAYTYMPG |
Full Sequence |
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Protein Sequence Length: 326 Download |
MIRAGVAAAL VLLLCQLSPS ASTACLLPPS FPPPETSSTA VFCVDKSGCC NYTTVQAAVD 60 AVPDNSQKRT IVWINAGIYV EKVTLKKPNV TFQVQGMKAT TIVWNDTANF AKGTRNSASV 120 HIDAPGFVAK NISFKVIFPP APKPGTEGAQ AVAIRISGDK AAFSGCGFFG AQDTLLDEQH 180 RHYFKECFIE GSVDFIFGDG RSLYENSTLN SVAEELPQGQ HSINGAITAQ ARQFPENNTG 240 FSFIGCTIQG TGWILLGRAW QAYSRVVFAY TYMPGIHGCL GDGANVAGRV AYARSVDDSQ 300 VRPFLDASYI DGEEWLKPFD DALIA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 6.0e-76 | 44 | 317 | 298 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 2.0e-89 | 41 | 320 | 311 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-95 | 44 | 318 | 301 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 8.0e-102 | 44 | 318 | 306 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-138 | 40 | 321 | 306 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83093.1 | 0 | 36 | 325 | 81 | 393 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 36 | 325 | 206 | 518 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_002445213.1 | 0 | 38 | 325 | 88 | 398 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
RefSeq | XP_002454459.1 | 0 | 22 | 324 | 36 | 349 | hypothetical protein SORBIDRAFT_04g031450 [Sorghum bicolor] |
RefSeq | XP_002521065.1 | 0 | 27 | 320 | 79 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-32 | 43 | 317 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-27 | 43 | 317 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.000000000000002 | 52 | 206 | 44 | 214 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000000007 | 36 | 209 | 2 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000000007 | 36 | 209 | 2 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |