Basic Information | |
---|---|
Species | Setaria italica |
Cazyme ID | Si019228m |
Family | GH3 |
Protein Properties | Length: 626 Molecular Weight: 67732.6 Isoelectric Point: 7.5763 |
Chromosome | Chromosome/Scaffold: 1 Start: 8563451 End: 8568891 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 98 | 332 | 0 |
LSSRLGIPMLYGIDAVHGHNNVYRATIFPHNIGLGCTRDPELVQKIGAAVALEVRATGIPYVFAPCIAVCRDPRWGRCYESFSEDPKLVQQMTSIISGFQ GEIPANGRLGAPSVSGQRNVAACAKHYVGDGGTTNGINENNTVATFHELLSIHMPPYYNAVIRGVSTVMVSFSSLNGVKMHANRPFVTDFLKTKLRFRGF VISDYEGIDRLTTPQHADYVLSVKLGILAGIDMVM |
Full Sequence |
---|
Protein Sequence Length: 626 Download |
AAMASGGGGG GEHRYGGAAK YKDPKQPLNT RINDLLRRMT LAEKIGQMSQ IERENATADV 60 MRNYFIGSVL SGGGSVPSPN AAPAEWVRMV NEIQRGALSS RLGIPMLYGI DAVHGHNNVY 120 RATIFPHNIG LGCTRDPELV QKIGAAVALE VRATGIPYVF APCIAVCRDP RWGRCYESFS 180 EDPKLVQQMT SIISGFQGEI PANGRLGAPS VSGQRNVAAC AKHYVGDGGT TNGINENNTV 240 ATFHELLSIH MPPYYNAVIR GVSTVMVSFS SLNGVKMHAN RPFVTDFLKT KLRFRGFVIS 300 DYEGIDRLTT PQHADYVLSV KLGILAGIDM VMIPYRYTEF IDDLTLLVQN GTIPMSRIDD 360 AVRRILRVKF TMGLFEHPYA DPSLTGELGK QEHRDLAREA VRKSLVLLKN GKPGEKPLLP 420 LPKKAYGGSI LVAGSHADDL GSQCGGWTIT WQGLTGNNLT AGTTMLDGIK RAVEPAIDVV 480 YAKNPDAGFM QQNKVRFDYA IVVVGEPPYA ETFGDNLNLT IPAPGPDVIW NVCGSIKCVV 540 VLVSGRPLVV EPYIGIVDAL VAAWLPGTEG QGVADVLFGD YGFTGKLSRT WFRSAEQLPM 600 NAGDAHYDPL FPFGFGLETQ PWAGY* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 3.0e-30 | 27 | 609 | 623 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 5.0e-32 | 429 | 617 | 205 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 1.0e-69 | 39 | 450 | 420 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 4.0e-75 | 24 | 617 | 672 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 8.0e-80 | 40 | 368 | 333 | + Glycosyl hydrolase family 3 N terminal domain. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF07705.2 | 0 | 20 | 620 | 16 | 617 | Os02g0131400 [Oryza sativa Japonica Group] |
RefSeq | NP_001045791.1 | 0 | 20 | 620 | 44 | 645 | Os02g0131400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451476.1 | 0 | 19 | 621 | 55 | 659 | hypothetical protein SORBIDRAFT_04g002570 [Sorghum bicolor] |
RefSeq | XP_002451477.1 | 0 | 3 | 561 | 1 | 540 | hypothetical protein SORBIDRAFT_04g002580 [Sorghum bicolor] |
RefSeq | XP_002453253.1 | 0 | 1 | 621 | 33 | 655 | hypothetical protein SORBIDRAFT_04g002560 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 21 | 625 | 5 | 605 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 1iex_A | 0 | 21 | 625 | 5 | 605 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 1iew_A | 0 | 21 | 625 | 5 | 605 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 1iev_A | 0 | 21 | 625 | 5 | 605 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
PDB | 1ieq_A | 0 | 21 | 625 | 5 | 605 | A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO784016 | 414 | 81 | 494 | 0 |
FN998758 | 311 | 81 | 391 | 0 |
FN998446 | 305 | 81 | 385 | 0 |
FN998760 | 299 | 108 | 406 | 0 |
HO784016 | 47 | 20 | 66 | 0.000000000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|