y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si019694m |
Family | CE8 |
Protein Properties | Length: 387 Molecular Weight: 42007.8 Isoelectric Point: 6.7706 |
Chromosome | Chromosome/Scaffold: 1 Start: 41686404 End: 41687683 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 78 | 368 | 0 |
DGSYKTISEAIANIPDGSTKRYVLYLKAGAVFREKLFLSRSKPFVTIRSSDPNNPAVIVWNDTATTPGKDGKPLGVDNSSTVTIESDYFIAYSVVFKNDA PLPKLGENKGEAPALRVLGTKAIFYNCTIDGGQGALYDQSGLHYFKSSVIKGTIDFIFGSAKSFYEDCSIVSVNKEITTLPMAPLQQQQRDKTIKAAPGE SGFSFKTCTFKGDGQNIYLGRVGTPFVFSYSQIDKELMAIISDGGRVQLAERIGSTYYADFKSYGPGLAKMLTKDLTYAEAKPFLGVHYIS |
Full Sequence |
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Protein Sequence Length: 387 Download |
MAKSKQTLLL SLLLTVLELV SLPAPSCQDV NFEVWLRNQP TDPGKDVGCV KTDVALSSAE 60 TNKVTNSIDP TTELRPEDGS YKTISEAIAN IPDGSTKRYV LYLKAGAVFR EKLFLSRSKP 120 FVTIRSSDPN NPAVIVWNDT ATTPGKDGKP LGVDNSSTVT IESDYFIAYS VVFKNDAPLP 180 KLGENKGEAP ALRVLGTKAI FYNCTIDGGQ GALYDQSGLH YFKSSVIKGT IDFIFGSAKS 240 FYEDCSIVSV NKEITTLPMA PLQQQQRDKT IKAAPGESGF SFKTCTFKGD GQNIYLGRVG 300 TPFVFSYSQI DKELMAIISD GGRVQLAERI GSTYYADFKS YGPGLAKMLT KDLTYAEAKP 360 FLGVHYISGQ TWILSIPPEH LDAPAP* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 5.0e-42 | 81 | 373 | 312 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-49 | 79 | 373 | 310 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-50 | 79 | 373 | 310 | + pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-62 | 62 | 374 | 323 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 2.0e-64 | 53 | 379 | 338 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY81792.1 | 0 | 46 | 379 | 71 | 399 | hypothetical protein OsI_36964 [Oryza sativa Indica Group] |
GenBank | EAZ19254.1 | 0 | 45 | 379 | 99 | 427 | hypothetical protein OsJ_34791 [Oryza sativa Japonica Group] |
RefSeq | NP_001068464.1 | 0 | 46 | 377 | 71 | 398 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068465.1 | 0 | 45 | 379 | 19 | 347 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131452.1 | 0 | 23 | 378 | 34 | 395 | hypothetical protein LOC100192787 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1e-19 | 79 | 247 | 17 | 172 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-16 | 79 | 382 | 13 | 313 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_B | 0.000000000000007 | 80 | 249 | 17 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_A | 0.000000000000007 | 80 | 249 | 17 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt6_B | 0.000000000000007 | 80 | 249 | 17 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |