Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si019878m |
Family | GT47 |
Protein Properties | Length: 506 Molecular Weight: 56448.1 Isoelectric Point: 7.5741 |
Chromosome | Chromosome/Scaffold: 1 Start: 12299969 End: 12301486 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 75 | 415 | 0 |
CAGRRIYMYDLPPRFNADLARACGKHSTGMDMCRHVANDGFGVPLFGGEGTGLPERGAYDTDQYTLAMIFHARMRRYECMAADAAAADAVFVPFYAGFDA SLTLWQSDVAARDALPRDLVAWLTRRREWRAMGGRDHFLVLGRGTWDFIRADDGGWGNALMTYPAIRNMTLLTIEASPWLGNDFAVPFPSHFHPSSDADV AAWQDRVRRAERKWLWAFAGALLPSGSTKTVRAQIIQQCRASPGACGILGGRHGLYNSPGRFLRLMESAVFCVQPRGDSFTRKATFDAILAGCIPVFFHP ASAYLQYTWHLPRDYRSYSVFIPHADVVDRNASIEAALRRI |
Full Sequence |
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Protein Sequence Length: 506 Download |
VEEEAMADDG YGAGSLRRPS WICHLAVIST TFWALLFYFH YAMQGNMASI FLKPSSFSLP 60 SLPPSLSGWL GQDRCAGRRI YMYDLPPRFN ADLARACGKH STGMDMCRHV ANDGFGVPLF 120 GGEGTGLPER GAYDTDQYTL AMIFHARMRR YECMAADAAA ADAVFVPFYA GFDASLTLWQ 180 SDVAARDALP RDLVAWLTRR REWRAMGGRD HFLVLGRGTW DFIRADDGGW GNALMTYPAI 240 RNMTLLTIEA SPWLGNDFAV PFPSHFHPSS DADVAAWQDR VRRAERKWLW AFAGALLPSG 300 STKTVRAQII QQCRASPGAC GILGGRHGLY NSPGRFLRLM ESAVFCVQPR GDSFTRKATF 360 DAILAGCIPV FFHPASAYLQ YTWHLPRDYR SYSVFIPHAD VVDRNASIEA ALRRIPPATV 420 ARMQEEVVRL IPTVMYRDPA ATQVSFKDAF DVSVDAVLRR VAKRRRAAAE GREYQDSVDG 480 PDSWKYDLLE DGQTHVGPHE FDPYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-62 | 74 | 415 | 356 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ16326.1 | 0 | 4 | 505 | 4 | 472 | hypothetical protein OsJ_31788 [Oryza sativa Japonica Group] |
GenBank | EEC67105.1 | 0 | 4 | 505 | 123 | 625 | hypothetical protein OsI_33901 [Oryza sativa Indica Group] |
RefSeq | NP_001064768.1 | 0 | 4 | 505 | 4 | 506 | Os10g0458900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002468517.1 | 0 | 73 | 505 | 137 | 569 | hypothetical protein SORBIDRAFT_01g047270 [Sorghum bicolor] |