Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si021080m |
Family | GH35 |
Protein Properties | Length: 1012 Molecular Weight: 111714 Isoelectric Point: 6.0104 |
Chromosome | Chromosome/Scaffold: 3 Start: 34812423 End: 34824661 |
Description | beta galactosidase 9 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 164 | 466 | 0 |
ILGGERRMLVSAGLHYPRATPEMWPSLIAKCKEGGADVIETYIFWNGHEPVKGQYYFEGRFDIVKFAKLVAAEGLFLFLRIGPYACAEWNFGGFPVWLRD IPGIEFRTDNEPYKAEMQTFVTKIVNIMKEEKLYSWQGGPIILQQIENEYGNIQGRYGQAGKRYMLWAAQMALALDTGVPWVMCRQTDAPEQILDTCNAF YCDGFKPNSYNKPTIWTEDWDGWYADWGEPLPHRPVQDSAFAVARFYQRGGSLQNYYMYFGGTNFERTAGGPRQITSYDYDAPIDEYGILRQPKWGHLKD LHA |
Full Sequence |
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Protein Sequence Length: 1012 Download |
MCLSLLQTTA YWALWLDDTE GFYRDIIAGP TIHDVDVCCS VWLIRNDYVL RVRRAHLANS 60 TAPDFSLPRA CASLPPSAPQ FPVPTPLCSL LPASAMVAFS PSPPSRWPLP PRFLALPILL 120 CLGCLAAPAS VRAAGVLRQV VVGGGGGGTF FEPFNVTYDH RAVILGGERR MLVSAGLHYP 180 RATPEMWPSL IAKCKEGGAD VIETYIFWNG HEPVKGQYYF EGRFDIVKFA KLVAAEGLFL 240 FLRIGPYACA EWNFGGFPVW LRDIPGIEFR TDNEPYKAEM QTFVTKIVNI MKEEKLYSWQ 300 GGPIILQQIE NEYGNIQGRY GQAGKRYMLW AAQMALALDT GVPWVMCRQT DAPEQILDTC 360 NAFYCDGFKP NSYNKPTIWT EDWDGWYADW GEPLPHRPVQ DSAFAVARFY QRGGSLQNYY 420 MYFGGTNFER TAGGPRQITS YDYDAPIDEY GILRQPKWGH LKDLHAAIKL CEPALTAVDG 480 SPQYVKLGPM QEAHVYSSAK VHTNGSISGN GQICSAFLAN IDEHKYVSVW IFGKSYSLPP 540 WSVSILPDCE NVAFNTARVG TQTSIFTVES GSPSYSSRHK RRSLPLIGGP YLSSTWWTSK 600 EPIGKWGEGS FAAQGILEHL NVTKDISDYL SYTTSVNISD EDVAYWNSKG VLPSITIDQI 660 RDVARVFVNG KLAGSKVGHW VSLNQPVQLV QGPNELTLLS EIVGLQNYGA FLEKDGAGFR 720 GQVKLTGLSN GDIDLTNSLW TYQIGLKGEF SRIYSSENQG YAKWSSMQND DKQTPFTWFK 780 TMFDAPEGND PVAIGLGSMG KGQAWVNGHL IGRYWSIVAP ESGCPSSCNY AGAYSDSKCR 840 SNCGMASQSW YHIPREWLQE SGNLLVLFEE TGGDPFQISL EAHYTKTICS KISETYYPPL 900 YSWSRAANGR ASVNTAAPEL HLQCDEGHVI SKITFASYGT PSGSCQNFSV GNCHASTTLD 960 LVTEACVGQN KCSISVTNDV FGDPCRKVVK DLAVEAECSP PLATKESRDD M* 1020 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1874 | LacA | 1.0e-18 | 156 | 458 | 367 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam02140 | Gal_Lectin | 1.0e-26 | 922 | 998 | 80 | + Galactose binding lectin domain. | ||
pfam01301 | Glyco_hydro_35 | 2.0e-145 | 164 | 468 | 320 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 155 | 999 | 852 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAE72075.1 | 0 | 119 | 998 | 11 | 883 | pear beta-galactosidase3 [Pyrus communis] |
DDBJ | BAF31232.1 | 0 | 150 | 998 | 25 | 878 | beta-D-galactosidase [Persea americana] |
RefSeq | NP_001066673.1 | 0 | 133 | 1011 | 38 | 919 | Os12g0429200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002328900.1 | 0 | 149 | 998 | 29 | 880 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002442888.1 | 0 | 136 | 1011 | 48 | 923 | hypothetical protein SORBIDRAFT_08g004410 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 2e-37 | 164 | 464 | 16 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.000005 | 632 | 817 | 387 | 548 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 9e-36 | 154 | 464 | 9 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 9e-36 | 154 | 464 | 9 | 330 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 743 | 155 | 890 | 0 |
HO780602 | 640 | 206 | 839 | 0 |
GT038380 | 338 | 671 | 1008 | 0 |
GT047081 | 346 | 667 | 1012 | 0 |
HO780602 | 35 | 838 | 872 | 0.000005 |
Sequence Alignments (This image is cropped. Click for full image.) |
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