| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si021098m |
| Family | GH2 |
| Protein Properties | Length: 980 Molecular Weight: 110415 Isoelectric Point: 6.8307 |
| Chromosome | Chromosome/Scaffold: 3 Start: 22133716 End: 22140673 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 40 | 767 | 0 |
| PHPAAPWIRAAVPGTVLGTLLKNQLIPDPFYGLNNQAIVDIADAGREYYTFWFFTTFQCVPSGNQHVTLNFRGINYSAEMYLNGHKEVLPKGMFRRHTID ITDVLHPDGNNMLAVLVHPPDHPGRIPPQGGQGGDHQIGKDVATQYVEGWDWMCPIRDRNTGIWDEVSISITGPVNIMDPHLVSTFHDDFKRSYLHCTLQ LENKSSWIADCTLKIQVSTELEGNICLVEHLQSYAIAIPPQSDLEYTIPPLFFYKPNLWWPNGMGKQSLYYVEISVDVKGFGESDSWSHYFGFRKIESTI DNSTGGRIFKVNGEPIFIRGGNWILSDGLLRLTKKRYMTDIKFHADMNFNMLRCWGGGLAERPDFYHFCDVYGLMVWQEFWITGDVDGRGIPVSNPNGPL DHHLFLLCARDTIKLLRNHASLALWVGGNEQVPPVDINRALKNDLKLHPMFVSSQASNSQEKCLSEESTDPSKYLDGTRVYVQGSMWDGFANGKGDFTDG PYEIQYPESFFKDSFYKYGFNPEVGSVGVPVAATIRATMPPEGWSIPIFKKRIGGYIEEVPNPIWDYHKFIPYSKPGKVHDQIELYGHPKDLDDFCEKAQ LVNYVQYRALLEGWTSFMWTKFTGLLIWKTQNPWTGLRGQFYDHLQDQTAGFYGCRCAAEPIHVQLNLASYFIEVVNTTADELADVAVEVSVWDLDGASP YYKVSEKIVVPPKKVKQIMEMKYPKMKD | |||
| Full Sequence |
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| Protein Sequence Length: 980 Download |
| MAAAAVGKRV LDAGWLAARS TEVALTGVQL TTTQPPAADP HPAAPWIRAA VPGTVLGTLL 60 KNQLIPDPFY GLNNQAIVDI ADAGREYYTF WFFTTFQCVP SGNQHVTLNF RGINYSAEMY 120 LNGHKEVLPK GMFRRHTIDI TDVLHPDGNN MLAVLVHPPD HPGRIPPQGG QGGDHQIGKD 180 VATQYVEGWD WMCPIRDRNT GIWDEVSISI TGPVNIMDPH LVSTFHDDFK RSYLHCTLQL 240 ENKSSWIADC TLKIQVSTEL EGNICLVEHL QSYAIAIPPQ SDLEYTIPPL FFYKPNLWWP 300 NGMGKQSLYY VEISVDVKGF GESDSWSHYF GFRKIESTID NSTGGRIFKV NGEPIFIRGG 360 NWILSDGLLR LTKKRYMTDI KFHADMNFNM LRCWGGGLAE RPDFYHFCDV YGLMVWQEFW 420 ITGDVDGRGI PVSNPNGPLD HHLFLLCARD TIKLLRNHAS LALWVGGNEQ VPPVDINRAL 480 KNDLKLHPMF VSSQASNSQE KCLSEESTDP SKYLDGTRVY VQGSMWDGFA NGKGDFTDGP 540 YEIQYPESFF KDSFYKYGFN PEVGSVGVPV AATIRATMPP EGWSIPIFKK RIGGYIEEVP 600 NPIWDYHKFI PYSKPGKVHD QIELYGHPKD LDDFCEKAQL VNYVQYRALL EGWTSFMWTK 660 FTGLLIWKTQ NPWTGLRGQF YDHLQDQTAG FYGCRCAAEP IHVQLNLASY FIEVVNTTAD 720 ELADVAVEVS VWDLDGASPY YKVSEKIVVP PKKVKQIMEM KYPKMKDAKP VYFLLLKLFR 780 LSDNGILSRN FYWLHLHGKD YKLLEQYQQK NIPLKIYTEV SVSGSRHKVR MTVENKSNKS 840 VAENTSSVST IDLGDASGSH NASKETTQQR NESGGSWRKI RSGLSIPRSS HNLRTLEVNG 900 TDSGVAFFLH FSVHSSGSST AKEKYNDTRI LPVHYSDNYF SLTPGEKTAI DISFEAPPGS 960 SPRVVLRGWN HHLDHAVMI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK10150 | PRK10150 | 0.002 | 90 | 469 | 421 | + beta-D-glucuronidase; Provisional | ||
| pfam02837 | Glyco_hydro_2_N | 4.0e-7 | 89 | 157 | 71 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| PRK10340 | ebgA | 1.0e-10 | 103 | 469 | 389 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 8.0e-11 | 216 | 333 | 118 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 2.0e-33 | 50 | 675 | 655 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79162.1 | 0 | 6 | 979 | 16 | 985 | hypothetical protein OsI_19836 [Oryza sativa Indica Group] |
| RefSeq | NP_001055444.1 | 0 | 7 | 979 | 16 | 984 | Os05g0391500 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | Q5H7P5 | 0 | 6 | 975 | 1 | 949 | EBM_LILLO RecName: Full=Mannosylglycoprotein endo-beta-mannosidase; Short=Endo-beta-mannosidase; Contains: RecName: Full=Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Contains: RecName: Full=Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Contains: RecName: Full=Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit |
| RefSeq | XP_002319539.1 | 0 | 4 | 977 | 2 | 972 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002439742.1 | 0 | 3 | 979 | 2 | 978 | hypothetical protein SORBIDRAFT_09g019350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 2 | 970 | 30 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 2 | 970 | 30 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 2 | 970 | 30 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_A | 0 | 2 | 970 | 30 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x05_B | 0 | 2 | 970 | 30 | 890 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO871600 | 333 | 305 | 637 | 0 |
| ES793920 | 364 | 378 | 739 | 0 |
| GO847639 | 334 | 522 | 855 | 0 |
| GO848159 | 317 | 174 | 490 | 0 |
| CK208936 | 346 | 446 | 791 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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