| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si021148m |
| Family | GT5 |
| Protein Properties | Length: 911 Molecular Weight: 102923 Isoelectric Point: 6.2696 |
| Chromosome | Chromosome/Scaffold: 3 Start: 12286649 End: 12292919 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 418 | 900 | 0 |
| HIVHIAAEMAPVAKVGGLADVISGLGKALQKKGHLVEIILPKYDCMQHNQINNLKVLDVVVQSYFEGNTFANKIWTGTVEGLPVYFIEPQHPGKFFWRAQ YYGEHDDFKRFSYFSRVALELLYQSGKKVDIIHCHDWQTAFVAPLYWDVYANLGFNSARICFTCHNFEYQGTAPAQDLAYCGLDVEHLDRPDRMRDNSHG RINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKIHSKKFVGILNGIDTDTWNPSTDRFLKVQYSANDLYGKSANKASLRKQLKMSSANASQPLV GCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPNIQREFEGIADQFQNNNNIRLLLKYDDALSHMIFAASDMFIVPSMFEPCGLTQMIAMRYGSV PVVRKTGGLNDSVFDFDDETIPMELRNGFTFLKADEQGFDSALERAFNYYHRKPEVWKQLVQKDMKIDFSWDTSASQYEDIYQ | |||
| Full Sequence |
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| Protein Sequence Length: 911 Download |
| MACSAAAAGA EATALLFRGP APSSIAGRSR LAVSRRTRHR NLRTGAQPPQ KSTPSANYRN 60 RVNIQRDRAG ASSDDEHQQN SDDENGLPNV QLEDLVGMIQ NTEKNILLLN QARLQALERA 120 DKILKEKEAL QRKMSILEIK LSETGAQSEL SSEGKSDTEA QEFDVLKEEN MLLKDDINFL 180 KSKLIEITET EESLFKLEKE RAILDASLRE LECAFIAAQS DMLKLGPMQH DAWWEKVENL 240 EELLESTANQ VEHAALILDG YHDFQEKIDK LEASLGATKI SEFCLYFVDL LKKRVKSVEE 300 RFQACNHEMH SQIELYEHSI VEFHDTLSKL IKESEKKSME HYAEGMPSEF WSRISLLIDG 360 WSLEKKISSN DANILREMAW TRDNRLREAY LSSRGMAERE LIDSFLKMAL PGTSSGLHIV 420 HIAAEMAPVA KVGGLADVIS GLGKALQKKG HLVEIILPKY DCMQHNQINN LKVLDVVVQS 480 YFEGNTFANK IWTGTVEGLP VYFIEPQHPG KFFWRAQYYG EHDDFKRFSY FSRVALELLY 540 QSGKKVDIIH CHDWQTAFVA PLYWDVYANL GFNSARICFT CHNFEYQGTA PAQDLAYCGL 600 DVEHLDRPDR MRDNSHGRIN VVKGAIVYSN IVTTVSPTYA QEVRSEGGRG LQDTLKIHSK 660 KFVGILNGID TDTWNPSTDR FLKVQYSAND LYGKSANKAS LRKQLKMSSA NASQPLVGCI 720 TRLVPQKGVH LIRHAIYKTA ELGGQFVLLG SSPVPNIQRE FEGIADQFQN NNNIRLLLKY 780 DDALSHMIFA ASDMFIVPSM FEPCGLTQMI AMRYGSVPVV RKTGGLNDSV FDFDDETIPM 840 ELRNGFTFLK ADEQGFDSAL ERAFNYYHRK PEVWKQLVQK DMKIDFSWDT SASQYEDIYQ 900 RAAARARAAA * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 4.0e-147 | 417 | 899 | 490 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 18 | 900 | 948 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 417 | 900 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 418 | 900 | 486 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 417 | 900 | 485 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK97773.1 | 0 | 1 | 901 | 1 | 905 | starch synthase isoform IV [Triticum aestivum] |
| GenBank | ABD64538.1 | 0 | 1 | 901 | 1 | 905 | starch synthase IV [Triticum aestivum] |
| RefSeq | NP_001056142.1 | 0 | 15 | 900 | 13 | 905 | Os05g0533600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001123590.1 | 0 | 1 | 901 | 1 | 900 | starch synthase IV [Zea mays] |
| RefSeq | XP_002440128.1 | 0 | 1 | 900 | 1 | 899 | hypothetical protein SORBIDRAFT_09g026570 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 417 | 901 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 417 | 901 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 417 | 901 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 417 | 901 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 417 | 901 | 1 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GO851132 | 331 | 492 | 822 | 0 |
| CB622719 | 296 | 496 | 791 | 0 |
| JG956717 | 266 | 447 | 712 | 0 |
| FL725385 | 260 | 524 | 783 | 0 |
| JG927258 | 276 | 454 | 729 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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