y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si021671m |
Family | GH5 |
Protein Properties | Length: 547 Molecular Weight: 60067.2 Isoelectric Point: 7.7323 |
Chromosome | Chromosome/Scaffold: 3 Start: 5378556 End: 5381974 |
Description | Cellulase (glycosyl hydrolase family 5) protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 256 | 531 | 4.2039e-44 |
RDHWSTYIVEDDFKFIASSGLTAVRIPVGWWIASDPNPPAPYVGGSLQALDNAFKWAEKYKLGVIIDLHAAPGSQNPWEHSSSRDGTQEWGTTDANIAQT VQVIDFLASRYATSPSLFAVELMNEPLAPRATLDSLTRYYRDGYNAVRKHSPTAYVVMSNRLGISSANSTELLPFAGGFQGAVIDVHYYTMFNKMFDNFT VQQNIDFVRTNFSGELAAVTTQNGPLTFVGEWVAEWKVPNATKEDYQKYATAQMNAYGQATFGWSYWTVKNANNHW |
Full Sequence |
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Protein Sequence Length: 547 Download |
MGCRGGTRLP LVRRLCFVVL LCASCLCSIL PHANAKRTPP PAVKPKAPPS PSPSQVVPAP 60 VPPYPALPVR AVCLGGWLVT EGWILPPLFD GIPNKDLLDG TQVQFKSALR KTYITADQGG 120 GGAVLANRTQ ASDWETFKLW RINETTFNFR TSGGQFVGIG ASDGIIVATA TAPALPETFQ 180 IVRCPFDKNR VRIKAANGYF VQGIATGEVI ADYGEPTRWS DWDASVFLMT KVGQQLQGEY 240 QLCNGYGTDK AAPVLRDHWS TYIVEDDFKF IASSGLTAVR IPVGWWIASD PNPPAPYVGG 300 SLQALDNAFK WAEKYKLGVI IDLHAAPGSQ NPWEHSSSRD GTQEWGTTDA NIAQTVQVID 360 FLASRYATSP SLFAVELMNE PLAPRATLDS LTRYYRDGYN AVRKHSPTAY VVMSNRLGIS 420 SANSTELLPF AGGFQGAVID VHYYTMFNKM FDNFTVQQNI DFVRTNFSGE LAAVTTQNGP 480 LTFVGEWVAE WKVPNATKED YQKYATAQMN AYGQATFGWS YWTVKNANNH WDLEWMIKNG 540 YINLKG* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06229 | FRG1 | 0.007 | 135 | 201 | 67 | + FRG1-like family. The human FRG1 gene maps to human chromosome 4q35 and has been identified as a candidate for facioscapulohumeral muscular dystrophy. Currently, the function of FRG1 is unknown. | ||
cd00257 | Fascin | 6.0e-9 | 101 | 223 | 123 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) | ||
pfam00150 | Cellulase | 3.0e-16 | 243 | 528 | 294 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 9.0e-30 | 234 | 541 | 343 | + Endoglucanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE62967.1 | 0 | 67 | 545 | 43 | 545 | hypothetical protein OsJ_17774 [Oryza sativa Japonica Group] |
RefSeq | NP_001055011.1 | 0 | 67 | 545 | 43 | 524 | Os05g0244500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001150774.1 | 0 | 1 | 546 | 1 | 539 | cellulase containing protein [Zea mays] |
RefSeq | XP_002440848.1 | 0 | 1 | 546 | 1 | 539 | hypothetical protein SORBIDRAFT_09g008170 [Sorghum bicolor] |
RefSeq | XP_002464704.1 | 0 | 29 | 545 | 26 | 515 | hypothetical protein SORBIDRAFT_01g024390 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1eqp_A | 1e-35 | 239 | 540 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1eqc_A | 2e-35 | 239 | 540 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
PDB | 1cz1_A | 2e-35 | 239 | 540 | 45 | 376 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A Resolution |
PDB | 2pbo_A | 2e-35 | 239 | 540 | 51 | 382 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |
PDB | 2pb1_A | 2e-35 | 239 | 540 | 51 | 382 | A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex With Unhydrolysed And Covalently Linked 2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside At 1.9 A |