| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si021744m |
| Family | GH28 |
| Protein Properties | Length: 528 Molecular Weight: 56316.8 Isoelectric Point: 7.2436 |
| Chromosome | Chromosome/Scaffold: 3 Start: 9368587 End: 9372520 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 153 | 478 | 0 |
| AAACKVEASTVLVPSELEFVVGPVSFSGPYCKPNILFQLDGTILAQTSARVWGSGLLQWLEFTKLTGIAIQGSGVINGRGQGWWTYSDPNDDDDNDAFRV ELDKMPQIKPTALRFYGSSNVTVTGITIVNSSQCHLKFDSCQGVMVHDLTISSPENSPNTDGIHLQNSREVNIHHTNMACGDDCVSIQTGCSDINIHNVN CGPGHGISIGGLGRYNTKACVSNVTVRDVNMVKTTNGVRIKTWQGGSGLVQGIRFSNIQVSEVQTPIIIDQFYCDKTTCRNQTSAVAVSGVQYENIRGTF TIKPAHFACSDSSPCSEITLTGIQLK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 528 Download |
| MRLELKGLTF LLLLVLLVLC SSVHLCDARS GKHWRHSRAP STSLLRGKGK AKSSSSHKQN 60 GKGNQSPYQQ SPIVPVSPSG SPAQGRGGQG PTMPAPSSGT GYTLPPPPPP LQPPPPPSLP 120 AAPSQDTVYN VVDFGAKGDG VTDDTQAFEA AWAAACKVEA STVLVPSELE FVVGPVSFSG 180 PYCKPNILFQ LDGTILAQTS ARVWGSGLLQ WLEFTKLTGI AIQGSGVING RGQGWWTYSD 240 PNDDDDNDAF RVELDKMPQI KPTALRFYGS SNVTVTGITI VNSSQCHLKF DSCQGVMVHD 300 LTISSPENSP NTDGIHLQNS REVNIHHTNM ACGDDCVSIQ TGCSDINIHN VNCGPGHGIS 360 IGGLGRYNTK ACVSNVTVRD VNMVKTTNGV RIKTWQGGSG LVQGIRFSNI QVSEVQTPII 420 IDQFYCDKTT CRNQTSAVAV SGVQYENIRG TFTIKPAHFA CSDSSPCSEI TLTGIQLKPL 480 IVPQFHLYNP FCWQAFGELY TPTLPPIPCL QIGKPAGNSV LSDGDLC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-64 | 126 | 478 | 357 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 4.0e-66 | 129 | 477 | 354 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-67 | 127 | 478 | 356 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-76 | 161 | 477 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-89 | 128 | 510 | 387 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT39158.1 | 0 | 1 | 527 | 1 | 571 | putative polygalacturonase [Oryza sativa Japonica Group] |
| GenBank | ACF79104.1 | 0 | 20 | 527 | 19 | 496 | unknown [Zea mays] |
| GenBank | EEC79746.1 | 0 | 1 | 527 | 1 | 534 | hypothetical protein OsI_21117 [Oryza sativa Indica Group] |
| GenBank | EEE64806.1 | 0 | 1 | 527 | 1 | 534 | hypothetical protein OsJ_19662 [Oryza sativa Japonica Group] |
| RefSeq | XP_002441571.1 | 0 | 20 | 527 | 17 | 537 | hypothetical protein SORBIDRAFT_09g029500 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-28 | 205 | 428 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 220 | 477 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 220 | 477 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 220 | 477 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 220 | 477 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
