| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si021901m |
| Family | GH28 |
| Protein Properties | Length: 485 Molecular Weight: 51768.1 Isoelectric Point: 4.7085 |
| Chromosome | Chromosome/Scaffold: 3 Start: 34366004 End: 34368233 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 114 | 439 | 0 |
| AACASDFAVLLVPSDGTFTITTTTFSGPCKPGLVFQVDGVLMPPDGPDCWPASDNRRQWVVFSNLDGMTLRGSGTIEGNGEDWWNLPCKPHRGPNGSTLR GPCDSPTLVRFFMSRNLVVEGLRVENSPEFHFRFDGCSDVRVDGLYISSPANSPNTDGIHVENTERVAIYNSRISNGDDCISIGTGSYDVDIQNVTCGPG HGISIGSLGVHNSQACVANVTVRNAVIRNSDNGLRIKTWQGGMGAVSGITFDTVVMENVRNCIIVDQYYCLDKRCMNQSTAVHVTDVSYTNVRGSYDVRA APIHFACSDTVPCTNITMSEVELLPA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MGVAVRLLLL PPLMAVAFCC YGVSGRSHFH KKPPRGSGGR RSGGGGKEGS VVSSPVVPPA 60 DDDTQPVTPQ PPTGIVPSDP ATPDEPCVFD VRAYGAVGDG TTDDTQAFRE AWKAACASDF 120 AVLLVPSDGT FTITTTTFSG PCKPGLVFQV DGVLMPPDGP DCWPASDNRR QWVVFSNLDG 180 MTLRGSGTIE GNGEDWWNLP CKPHRGPNGS TLRGPCDSPT LVRFFMSRNL VVEGLRVENS 240 PEFHFRFDGC SDVRVDGLYI SSPANSPNTD GIHVENTERV AIYNSRISNG DDCISIGTGS 300 YDVDIQNVTC GPGHGISIGS LGVHNSQACV ANVTVRNAVI RNSDNGLRIK TWQGGMGAVS 360 GITFDTVVME NVRNCIIVDQ YYCLDKRCMN QSTAVHVTDV SYTNVRGSYD VRAAPIHFAC 420 SDTVPCTNIT MSEVELLPAS GELVDDPFCW SAYGTQQTPT IPPITCLQEG LPDALLDNPD 480 LKCR* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-74 | 89 | 440 | 357 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 7.0e-82 | 89 | 442 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-87 | 121 | 436 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-96 | 74 | 436 | 373 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-116 | 88 | 454 | 371 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS98503.1 | 0 | 19 | 484 | 25 | 504 | unknown protein [Oryza sativa Japonica Group] |
| RefSeq | NP_001055086.1 | 0 | 19 | 484 | 25 | 485 | Os05g0279900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002263668.1 | 0 | 79 | 483 | 72 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312305.1 | 0 | 23 | 474 | 24 | 473 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519290.1 | 0 | 23 | 477 | 24 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 6e-23 | 188 | 436 | 79 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-23 | 188 | 436 | 79 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 6e-23 | 188 | 436 | 79 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 6e-23 | 188 | 436 | 79 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 6e-23 | 188 | 436 | 79 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
