| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si022052m |
| Family | GH28 |
| Protein Properties | Length: 446 Molecular Weight: 47530.1 Isoelectric Point: 8.2148 |
| Chromosome | Chromosome/Scaffold: 3 Start: 8594054 End: 8596475 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 419 | 0 |
| RGGTLLYVPPGVWLTGPFNLTSHMTLFLARGAVIRATQDTSSWPLVDPLPSYGRGRELPGGRYMSLIHGNGLQDVFITGENGTIDGQGSVWWDMWKKRTL PFTRPHLLELMYSTDVIVSNVVFQDSPFWNIHPVYCSNVVIANVTVLAPHDSPNTDGIDLDSCNNVCIEDSYISAGDDLISIKSGWDEYGIAFGRPSSGI TIRRITGSGPFAGFAVGSETSGGVENVLVEHLNLFSMGVGIHIKTNSGRGGFIRNITVSEVTLNGARYGLRIAGDVGGHPDTSYNPNVLPVVHSVTIKNV WGQNIRQAGLIRGIRNSVFSRICLSNVKLYGSASIGPWKCRDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| MPTPPRSLLA AAVVLMLLLL LSPAGAQETC SGIAPAPRRR GAWMSVASFG GRGDGQTLNT 60 AAFARAVARI ESRRGARGGT LLYVPPGVWL TGPFNLTSHM TLFLARGAVI RATQDTSSWP 120 LVDPLPSYGR GRELPGGRYM SLIHGNGLQD VFITGENGTI DGQGSVWWDM WKKRTLPFTR 180 PHLLELMYST DVIVSNVVFQ DSPFWNIHPV YCSNVVIANV TVLAPHDSPN TDGIDLDSCN 240 NVCIEDSYIS AGDDLISIKS GWDEYGIAFG RPSSGITIRR ITGSGPFAGF AVGSETSGGV 300 ENVLVEHLNL FSMGVGIHIK TNSGRGGFIR NITVSEVTLN GARYGLRIAG DVGGHPDTSY 360 NPNVLPVVHS VTIKNVWGQN IRQAGLIRGI RNSVFSRICL SNVKLYGSAS IGPWKCRDVS 420 GGALDVQPSP CTELASTSET GFCTT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 9.0e-25 | 46 | 432 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 8.0e-25 | 45 | 339 | 310 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-27 | 44 | 351 | 324 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-33 | 150 | 423 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-55 | 31 | 386 | 399 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAT44156.1 | 0 | 27 | 444 | 34 | 473 | putative polygalacturonase [Oryza sativa Japonica Group] |
| GenBank | EAY99223.1 | 0 | 27 | 444 | 34 | 447 | hypothetical protein OsI_21181 [Oryza sativa Indica Group] |
| RefSeq | NP_001056466.1 | 0 | 27 | 444 | 34 | 447 | Os05g0587000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149385.1 | 0 | 25 | 444 | 27 | 446 | LOC100283011 [Zea mays] |
| RefSeq | XP_002441600.1 | 0 | 22 | 445 | 18 | 439 | hypothetical protein SORBIDRAFT_09g030140 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8.99998e-41 | 16 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8.99998e-41 | 16 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8.99998e-41 | 16 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8.99998e-41 | 16 | 409 | 1 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-16 | 88 | 420 | 51 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
