| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si022189m |
| Family | GH28 |
| Protein Properties | Length: 413 Molecular Weight: 43296.3 Isoelectric Point: 7.4798 |
| Chromosome | Chromosome/Scaffold: 3 Start: 11809688 End: 11812208 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 61 | 397 | 0 |
| AAACDSSEQAVLAVPVGKAYRIWPVQLYGPCKRKLKLLISGSIVAPASPDEWAGRDPMKWLYIYGVDGLSVSGGGTIDGSGQQWWASTCKRKKTPPCYSG PRPKTVHFEECRGVSVQGVTLQNGQQFHLTFTRCSDVKASFLRVIAPGDSPNTDGVHLNSSSHVQITDNLISTGDDCVSMVGNCSDVRVKDISCGPGHGI SIGSLGKNRTTDMVENVKVDTCFLTNTTNGVRIKSWQGGMGFARDLRFESIVMKNVSNPIIIDQYYCDQPTPCANQTRAVEVRKVEFAGIRGTSATAQAI SIACSDAVPCQDLELKNVNLTLEGGGHATASCYRASG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MAASLPPPPA LALAALAAAA AILLLCGAGA AEARVLLTLD DFGAVGDGIA NDTQAFLDAW 60 AAACDSSEQA VLAVPVGKAY RIWPVQLYGP CKRKLKLLIS GSIVAPASPD EWAGRDPMKW 120 LYIYGVDGLS VSGGGTIDGS GQQWWASTCK RKKTPPCYSG PRPKTVHFEE CRGVSVQGVT 180 LQNGQQFHLT FTRCSDVKAS FLRVIAPGDS PNTDGVHLNS SSHVQITDNL ISTGDDCVSM 240 VGNCSDVRVK DISCGPGHGI SIGSLGKNRT TDMVENVKVD TCFLTNTTNG VRIKSWQGGM 300 GFARDLRFES IVMKNVSNPI IIDQYYCDQP TPCANQTRAV EVRKVEFAGI RGTSATAQAI 360 SIACSDAVPC QDLELKNVNL TLEGGGHATA SCYRASGKTA GAVVPPSCLA KS* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-88 | 37 | 412 | 382 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-90 | 64 | 408 | 345 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-93 | 42 | 408 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-104 | 37 | 405 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-155 | 36 | 412 | 377 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACF80870.1 | 0 | 32 | 412 | 29 | 411 | unknown [Zea mays] |
| GenBank | ACF88280.1 | 0 | 31 | 412 | 24 | 407 | unknown [Zea mays] |
| GenBank | EEC79626.1 | 0 | 28 | 412 | 26 | 410 | hypothetical protein OsI_20838 [Oryza sativa Indica Group] |
| RefSeq | NP_001151886.1 | 0 | 32 | 412 | 29 | 411 | polygalacturonase [Zea mays] |
| RefSeq | XP_002440167.1 | 0 | 26 | 412 | 21 | 408 | hypothetical protein SORBIDRAFT_09g027150 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-23 | 131 | 381 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 1e-18 | 64 | 392 | 3 | 340 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 4e-17 | 129 | 392 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-17 | 129 | 392 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-17 | 129 | 392 | 72 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
