Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si022230m |
Family | CE8 |
Protein Properties | Length: 402 Molecular Weight: 43341.5 Isoelectric Point: 9.5031 |
Chromosome | Chromosome/Scaffold: 3 Start: 12933286 End: 12935836 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 104 | 395 | 0 |
VVDKTPGAGDFTSIQAAVDSLPLINLARVVIKVNAGTYTEKVNISPMRAFVTVEGAGADKTVVQWGDTADTVGSWGRAMGTFGSATFAVNSMFFVAKNIT FKNTAPMPKPGALGKQGVALRISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSIDFIFGNALSLYEGCHVHAIARNYGALTAQNRQSLLEDTGFS FVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPTREMTVFYGQYKCTGPGANYAGRVQWSRELTDEEAKPFISLDFIDG |
Full Sequence |
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Protein Sequence Length: 402 Download |
MATARLVLLC CCVAAALLAA SCGGVAAGGR HGPKRHTHTR RLRPGKGGAA AAAGAAAKPY 60 PVNATRVEAI ERQFTRWVRF MGAPGHSSYN RALNRAILPA RTLVVDKTPG AGDFTSIQAA 120 VDSLPLINLA RVVIKVNAGT YTEKVNISPM RAFVTVEGAG ADKTVVQWGD TADTVGSWGR 180 AMGTFGSATF AVNSMFFVAK NITFKNTAPM PKPGALGKQG VALRISADNA AFVGCNFLGA 240 QDTLYDHLGR HYYRDCYIEG SIDFIFGNAL SLYEGCHVHA IARNYGALTA QNRQSLLEDT 300 GFSFVNCRVT GSGALYLGRA WGTFSRVVFA YTYMDNIIIP RGWYNWGDPT REMTVFYGQY 360 KCTGPGANYA GRVQWSRELT DEEAKPFISL DFIDGLEWLK L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 4.0e-113 | 99 | 400 | 302 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 8.0e-114 | 101 | 399 | 300 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 4.0e-117 | 102 | 400 | 307 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 6.0e-120 | 101 | 399 | 301 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 60 | 401 | 342 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79546.1 | 0 | 9 | 401 | 13 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 1 | 401 | 1 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056077.1 | 0 | 9 | 401 | 13 | 398 | Os05g0521600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002440102.1 | 0 | 34 | 401 | 39 | 406 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
RefSeq | XP_002458469.1 | 0 | 1 | 401 | 3 | 402 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 104 | 400 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6.02558e-44 | 110 | 400 | 11 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-28 | 104 | 387 | 34 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-17 | 104 | 387 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-17 | 104 | 387 | 7 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |