CAZyme Information

Basic Information
SpeciesSetaria italica
Cazyme IDSi022612m
FamilyGH18
Protein PropertiesLength: 335 Molecular Weight: 35945.3 Isoelectric Point: 6.9616
ChromosomeChromosome/Scaffold: 3 Start: 48311711 End: 48312725
Description
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18912544.8e-21
  GRFVVYWDEANLTPAAVAAAKHRGGGSADNKNNVRVALSLGGDTVHGANATFRASSVDAWVANAVASLTEILTTYGLDGIDVDYEHFGERETPEVFAECV
  GRLVRALRALGVISFASVAPFANPDVQAHYGELWRRYGREFDYVNFQFYAYAANTTVAEFLGYY
Full Sequence
Protein Sequence     Length: 335     Download
MASLHQRITA MVRTLFPFLL LFVVGATATA SASSGARRPL FREYIGAEGK NVTFADVPVH    60
PGVDFHFILS FAIDYAVDAA NASAPPQPTD GRFVVYWDEA NLTPAAVAAA KHRGGGSADN    120
KNNVRVALSL GGDTVHGANA TFRASSVDAW VANAVASLTE ILTTYGLDGI DVDYEHFGER    180
ETPEVFAECV GRLVRALRAL GVISFASVAP FANPDVQAHY GELWRRYGRE FDYVNFQFYA    240
YAANTTVAEF LGYYNEQSSR YAGGGGKVLV GFGTDPASNG LGPGKGFFRA CRELRRQGRL    300
HGVFVWAADN SAADGFRYER VAQRFLAGAA PGFT* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd06546GH18_CTS3_chitinase2.0e-587239166+
cd02871GH18_chitinase_D-like2.0e-851239202+
cd00598GH18_chitinase-like1.0e-1066239178+
pfam00704Glyco_hydro_185.0e-11123242122+
cd06544GH18_narbonin2.0e-10040311272+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankABD32310.10173288302Glycoside hydrolase, family 18 [Medicago truncatula]
RefSeqNP_001144844.103430530296hypothetical protein LOC100277930 [Zea mays]
RefSeqXP_002318148.10183273298predicted protein [Populus trichocarpa]
RefSeqXP_002443505.103833340336hypothetical protein SORBIDRAFT_08g020700 [Sorghum bicolor]
RefSeqXP_002532811.10113273302Chitinase 1 precursor, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3sim_B0403262273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB3sim_A0403262273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB1nar_A1e-26383272288A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
Metabolic Pathways
Pathway NameReactionECProtein Name
chitin degradation II3.2.1.14-RXNEC-3.2.1.14chitinase
chitin degradation IIRXN-12623EC-3.2.1.14chitinase
chitin degradation IIRXN-12624EC-3.2.1.14chitinase
chitin degradation III (carnivorous plants)3.2.1.14-RXNEC-3.2.1.14chitinase
Transmembrane Domains
StartEnd
1234
Signal Peptide
Cleavage Site
32
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DR829949225382620
DR9611292111253330
DY618350312163270
CO165323287403260
EC955064291403300
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_046_00008.1Aquca_014_00353.1Aquca_010_00636.1Aquca_027_00184.1
Brachypodium distachyonBradi3g26850.1Bradi3g26810.1Bradi3g26840.1
Carica papayaevm.model.supercontig_139.6
Citrus clementinaCiclev10028881mCiclev10003729m
Citrus sinensisorange1.1g021511morange1.1g046094m
Eucalyptus grandisEucgr.B02439.1Eucgr.J02106.1
Fragaria vescamrna14033.1-v1.0-hybrid.59.211mrna14019.1-v1.0-hybridmrna15882.1-v1.0-hybridmrna14034.1-v1.0-hybridmrna17899.1-v1.0-hybrid
mrna22564.1-v1.0-hybrid
Glycine maxGlyma11g15512.1Glyma09g21615.1Glyma13g40590.1
Gossypium raimondiiGorai.003G135700.1Gorai.003G135800.1Gorai.003G134100.1Gorai.003G129600.1Gorai.011G120000.1
Gorai.003G138400.1
Linum usitatissimumLus10005172
Malus domesticaMDP0000904158MDP0000885802MDP0000644797MDP0000312089
Manihot esculentacassava4.1_024209mcassava4.1_027074m
Medicago truncatulaMedtr6g079630.1Medtr2g096030.1
Mimulus guttatusmgv1a019267mmgv1a024804m
Oryza sativaLOC_Os10g28050.1LOC_Os10g28080.1
Panicum virgatumPavirv00061810mPavirv00014582mPavirv00031712m
Phaseolus vulgarisPhvul.011G069900.1
Picea abiesMA_38396g0010MA_10427109g0010
Populus trichocarpaPotri.012G102400.1Potri.015G100500.1Potri.015G100600.1Potri.001G341700.1
Prunus persicappa023801mppa009038mppa009096m
Ricinus communis30039.m00023530039.m000234
Setaria italicaSi026720mSi028172mSi036765mSi036774m
Selaginella moellendorffii41118115493
Sorghum bicolorSb01g021920.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny