Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si024596m |
Family | GH19 |
Protein Properties | Length: 392 Molecular Weight: 40485.4 Isoelectric Point: 8.2235 |
Chromosome | Chromosome/Scaffold: 3 Start: 21464967 End: 21466395 |
Description | basic chitinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 159 | 376 | 0 |
VASVLTRELFDRMLPHRDDAACPGRGFYTYDAFVAAARAFPAFGATGGAAARKWEVAAFLAHTSHETSGGPFSWGYCYKETHCVPSARWPCSSNTTYHAR GPMQISYNYNYGPAGEAIAADLLSNRDMLTADAVVAFKTALWLWMTPRAPTEPSCHAVATGQWAPTPADRAAGRRPGFGLTTSILTGGLQCAAGSGRVAF YKRYCDVLGVSYGPDLDC |
Full Sequence |
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Protein Sequence Length: 392 Download |
MVVVSGERCQ PEGHDGRPGA GRSGPRLRRG ARARPAVRCG AQAGGALCPN NLCCSKYGYC 60 GRSCDHCGTG CHSQCAHGGG AARRPEARCA PTTSAAYGYC GRSCDHCGAG CQSQCAHGGG 120 AQAGGAACPH GLCCSRYGYC GLGGDHCGAG CQGQCAAGVA SVLTRELFDR MLPHRDDAAC 180 PGRGFYTYDA FVAAARAFPA FGATGGAAAR KWEVAAFLAH TSHETSGGPF SWGYCYKETH 240 CVPSARWPCS SNTTYHARGP MQISYNYNYG PAGEAIAADL LSNRDMLTAD AVVAFKTALW 300 LWMTPRAPTE PSCHAVATGQ WAPTPADRAA GRRPGFGLTT SILTGGLQCA AGSGRVAFYK 360 RYCDVLGVSY GPDLDCAGQA PFDGVLRSSA Q* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00035 | ChtBD1 | 2.0e-8 | 42 | 75 | 34 | + Hevein or type 1 chitin binding domain. Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
cd06921 | ChtBD1_GH19_hevein | 3.0e-9 | 42 | 75 | 34 | + Hevein or Type 1 chitin binding domain subfamily co-occuring with family 19 glycosyl hydrolases or with barwin domains. This subfamily includes Hevein, a major IgE-binding allergen in natural rubber latex. ChtBD1 is a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
pfam00187 | Chitin_bind_1 | 2.0e-9 | 42 | 75 | 34 | + Chitin recognition protein. | ||
cd00325 | chitinase_glyco_hydro_19 | 7.0e-89 | 164 | 376 | 230 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
pfam00182 | Glyco_hydro_19 | 4.0e-92 | 162 | 376 | 233 | + Chitinase class I. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0008061 | chitin binding |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA25638.1 | 0.000004 | 38 | 75 | 22 | 59 | chitinase [Oryza sativa (indica cultivar-group)] |
DDBJ | BAA25638.1 | 0 | 120 | 390 | 24 | 325 | chitinase [Oryza sativa (indica cultivar-group)] |
RefSeq | NP_001055478.1 | 0.000004 | 38 | 75 | 34 | 71 | Os05g0399700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001055478.1 | 0 | 120 | 390 | 36 | 337 | Os05g0399700 [Oryza sativa (japonica cultivar-group)] |
Swiss-Prot | Q9SAY3 | 0 | 120 | 390 | 36 | 337 | CHI7_ORYSI RecName: Full=Chitinase 7; AltName: Full=Pathogenesis related (PR)-3 chitinase 7; AltName: Full=Class I chitinase d; Short=OsChia1d; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3iwr_B | 0 | 120 | 383 | 5 | 299 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3iwr_B | 0.000000008 | 38 | 76 | 3 | 41 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3iwr_A | 0 | 120 | 383 | 5 | 299 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 3iwr_A | 0.000000008 | 38 | 76 | 3 | 41 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
PDB | 2dkv_A | 0 | 120 | 383 | 5 | 299 | A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
chitin degradation II | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12623 | EC-3.2.1.14 | chitinase |
chitin degradation II | RXN-12624 | EC-3.2.1.14 | chitinase |
chitin degradation III (carnivorous plants) | 3.2.1.14-RXN | EC-3.2.1.14 | chitinase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GT012928 | 240 | 161 | 382 | 0 |
GT012612 | 244 | 161 | 386 | 0 |
GT012187 | 240 | 161 | 382 | 0 |
GT012757 | 240 | 161 | 382 | 0 |
GR988990 | 240 | 161 | 382 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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