Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si024658m |
Family | PL4 |
Protein Properties | Length: 680 Molecular Weight: 74276.3 Isoelectric Point: 5.7992 |
Chromosome | Chromosome/Scaffold: 3 Start: 8007302 End: 8012624 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 29 | 660 | 0 |
AAGGVTLRVDPGQVVVDNGVVQVSLSRPQGQITGVRYGGGGDQNLLEYNASQGNSGGYWDVVWNYPGSDHPGGTMDMLDGTEFQVVSSSEEQVELSFRSS YNASRPNSVRLNVDKRLVMLRDSSGFYCYAIFEHAREHPALNISVARLAFKLNAAKFNYMAISDGIQRYMPSAADRDPPRGVPLAYKEAVLLVDPVEPEF RGEVDDKYQYSMDNEDNTVHGWIAGSNDDDPAAATGFWVVTPSNEFKNGGPLKRELTSHVGPTSLSVFLGPHYVGRDMVIEFEEGEYWKKVLGPVFIYLN SGRPDSKRGLWEDAKARAQAEVRKWPYDFPRSPDFAKAGERGSVTGRLWVRDGVANKQQQPAAMAYVGLAAPGQPASWATESKRYQFWTRAASDGSFSIG DVREGVYNLYAWVPGILGDYMHTFPVTVTPAGGVDVGDLVFEPPRSGPTLWEIGVPDRSAAEFYVPDPDPRYASRLFLTKDRYRQYGLWERYAALYPDSD LVFTVGESNHSTDWFFAHVTRKVVGGKGDTTVVPTTWQIRFHLDRVVAGGNYTLRVALAASHMSSLQVQVNGGGGDGAVGTRGALAAAFLMGDNNAIARH GIRGTEWSLDLGIDGRLLIRGDNTIHITQASA |
Full Sequence |
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Protein Sequence Length: 680 Download |
MAAAPRWCLK LAVGASMLVL LVAAAPPQAA GGVTLRVDPG QVVVDNGVVQ VSLSRPQGQI 60 TGVRYGGGGD QNLLEYNASQ GNSGGYWDVV WNYPGSDHPG GTMDMLDGTE FQVVSSSEEQ 120 VELSFRSSYN ASRPNSVRLN VDKRLVMLRD SSGFYCYAIF EHAREHPALN ISVARLAFKL 180 NAAKFNYMAI SDGIQRYMPS AADRDPPRGV PLAYKEAVLL VDPVEPEFRG EVDDKYQYSM 240 DNEDNTVHGW IAGSNDDDPA AATGFWVVTP SNEFKNGGPL KRELTSHVGP TSLSVFLGPH 300 YVGRDMVIEF EEGEYWKKVL GPVFIYLNSG RPDSKRGLWE DAKARAQAEV RKWPYDFPRS 360 PDFAKAGERG SVTGRLWVRD GVANKQQQPA AMAYVGLAAP GQPASWATES KRYQFWTRAA 420 SDGSFSIGDV REGVYNLYAW VPGILGDYMH TFPVTVTPAG GVDVGDLVFE PPRSGPTLWE 480 IGVPDRSAAE FYVPDPDPRY ASRLFLTKDR YRQYGLWERY AALYPDSDLV FTVGESNHST 540 DWFFAHVTRK VVGGKGDTTV VPTTWQIRFH LDRVVAGGNY TLRVALAASH MSSLQVQVNG 600 GGGDGAVGTR GALAAAFLMG DNNAIARHGI RGTEWSLDLG IDGRLLIRGD NTIHITQASA 660 LNQFVGVMYD YIRLEGPST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-26 | 368 | 467 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-44 | 479 | 675 | 198 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-55 | 52 | 330 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-71 | 52 | 232 | 181 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 26 | 679 | 41 | 691 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF29096.2 | 0 | 26 | 678 | 41 | 690 | Os12g0131900 [Oryza sativa Japonica Group] |
GenBank | EEC68814.1 | 0 | 23 | 679 | 38 | 648 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
RefSeq | NP_001066077.1 | 0 | 26 | 679 | 41 | 678 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002441644.1 | 0 | 2 | 679 | 3 | 722 | hypothetical protein SORBIDRAFT_09g030850 [Sorghum bicolor] |