| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si026072m |
| Family | GH51 |
| Protein Properties | Length: 673 Molecular Weight: 73868.8 Isoelectric Point: 5.6541 |
| Chromosome | Chromosome/Scaffold: 8 Start: 8880844 End: 8886175 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 178 | 534 | 0 |
| NLASITILVAGKSNWIKVKQKLVPQGTDRTSRLQITSEKKGVVWFDQVSLMPADTYKGHGFRNGLVSMLLDLKPRFLRFPGGCFVQGGWLRNAFRWRESI GPWEERSGHFGDCWNYWTDDGLGYFEFLQLSEDLGASPIWVFNSGLSYNDEVDTAAIAPFVKDVLDSLEFARGSANSSWGSVRAAMGHPEPFPVKYAAIG NEDCGKQFYNGNYLKFYSAIREAYPDIQLISNCDGSSGPLDHPADLYDFHVYADAKTLFSMKNTFDKTSRIGPKAFVSEYAVWKTDAGRGTLLAALAEAA FLTGLEKNSDVVEMACHAPLFVNDDIEKKWNPDVIVFNTWQHYGTPSYWMQLLFRES | |||
| Full Sequence |
|---|
| Protein Sequence Length: 673 Download |
| MGSMEGLSLT LIHFLLLFCI VCKCLASHLE ATQKVTLKID ASPKLARKIP DTLLGVFFEE 60 MGRGGAGGLW AELVSNRGFE AGGPNTPSNI DPWLIIGDDS SIFVETDRTS CFRKNIVALR 120 MEVLCNNDCP AGGVGIYNPG FWGMNIEDGK TYNLVMYVKS PQTASLTVSL TSSDGSRNLA 180 SITILVAGKS NWIKVKQKLV PQGTDRTSRL QITSEKKGVV WFDQVSLMPA DTYKGHGFRN 240 GLVSMLLDLK PRFLRFPGGC FVQGGWLRNA FRWRESIGPW EERSGHFGDC WNYWTDDGLG 300 YFEFLQLSED LGASPIWVFN SGLSYNDEVD TAAIAPFVKD VLDSLEFARG SANSSWGSVR 360 AAMGHPEPFP VKYAAIGNED CGKQFYNGNY LKFYSAIREA YPDIQLISNC DGSSGPLDHP 420 ADLYDFHVYA DAKTLFSMKN TFDKTSRIGP KAFVSEYAVW KTDAGRGTLL AALAEAAFLT 480 GLEKNSDVVE MACHAPLFVN DDIEKKWNPD VIVFNTWQHY GTPSYWMQLL FRESSGSIVH 540 PTTISSSSSS NVSLAASAIT WKDSDNSSFL RVKIVNFESV AVQVTISTTG LQASIDVLRS 600 TATVITSSNV MDENSFSNPN KVVPVKSQLF DAAAHMQVTV APHSFTSFDL SLAPSKLVTL 660 AGRYNEYLMS EL* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.001 | 71 | 214 | 159 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3534 | AbfA | 2.0e-25 | 237 | 382 | 146 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 3.0e-29 | 455 | 644 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 1.0e-39 | 455 | 644 | 199 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN33779.1 | 0 | 11 | 658 | 35 | 677 | unknown [Zea mays] |
| GenBank | EEC67598.1 | 0 | 1 | 658 | 1 | 655 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| RefSeq | NP_001065660.1 | 0 | 1 | 658 | 1 | 655 | Os11g0131900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148977.1 | 0 | 11 | 658 | 35 | 677 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 1 | 658 | 1 | 653 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 6e-19 | 237 | 652 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 6e-19 | 237 | 652 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 6e-19 | 237 | 652 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 6e-19 | 237 | 652 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 6e-19 | 237 | 652 | 48 | 483 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
