y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si026099m |
Family | GH3 |
Protein Properties | Length: 645 Molecular Weight: 67813.7 Isoelectric Point: 7.201 |
Chromosome | Chromosome/Scaffold: 8 Start: 38190662 End: 38193043 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 9 | 182 | 0 |
LTFWSPNVNIFRDPRWGRGQETPGEDPAVSARYAAAYVRGLQQASPSGDSLKLAACCKHFTAYDLDRWGGTDRFHFNAVVAAQDLEDTFNVPFRACVANG NAASVMCSYNQVNGVPTCADEGFLKGTIRGKWGLDGYIVSDCDSVDVFFRDQHYTRTTEDAVAATLRAGLDLDC |
Full Sequence |
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Protein Sequence Length: 645 Download |
MYNGGQAGLT FWSPNVNIFR DPRWGRGQET PGEDPAVSAR YAAAYVRGLQ QASPSGDSLK 60 LAACCKHFTA YDLDRWGGTD RFHFNAVVAA QDLEDTFNVP FRACVANGNA ASVMCSYNQV 120 NGVPTCADEG FLKGTIRGKW GLDGYIVSDC DSVDVFFRDQ HYTRTTEDAV AATLRAGLDL 180 DCGPFLAQYT ESAVAKGKVS DADVDAALAN TVAVQMRLGM FDGDPAAGPF GHLGPKDVCT 240 PAHQELALEA ARQGVVLLKN KKGKHRGGVL PLRPATHRTV AVVGPHAEAT VAMIGNYAGK 300 PCRYTTPLQG VAGYVRQAVH AAGCTDVACA GTRQPIAAAV DAARRSDATV IVAGLDQKVE 360 AEGLDRSTLL LPGWQAELIS AVAKESKGPV VLVLMSGGPI DIAFAQNDPR IAAILWVGYP 420 GQAGGQAIAD VIFGHHNPGG KLPVTWYPED YLRKAPMTNM AMRANPASGY PGRTYRFYTG 480 PAILPFGHGL SYTQFTHSLA HAPEKLTVQL TGGHASAAAA SSSFPNATRS ASAVRVAHAR 540 CEGLTVPVHV DVRNAGDRDG AHTVLVYHSP PSAPGAPARQ LVAFEKVHVP AGGVARVEMG 600 VDVCEGMSVA DRDGVRRIPV GEHSLMIGEL THTVTLGVEQ LGGV* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 5.0e-39 | 12 | 288 | 282 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 6.0e-40 | 12 | 214 | 206 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-53 | 255 | 493 | 244 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 5.0e-68 | 12 | 603 | 637 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 1 | 636 | 644 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA95273.1 | 0 | 1 | 642 | 236 | 882 | Beta-D-xylosidase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACG29242.1 | 0 | 1 | 642 | 1 | 654 | auxin-induced beta-glucosidase [Zea mays] |
GenBank | EAY81823.1 | 0 | 1 | 642 | 236 | 884 | hypothetical protein OsI_36995 [Oryza sativa Indica Group] |
RefSeq | NP_001145980.1 | 0 | 1 | 642 | 140 | 793 | hypothetical protein LOC100279508 [Zea mays] |
RefSeq | XP_002451244.1 | 0 | 1 | 642 | 147 | 789 | hypothetical protein SORBIDRAFT_05g026400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 12 | 628 | 128 | 722 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
PDB | 3u48_A | 0 | 12 | 628 | 128 | 722 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
PDB | 3u4a_B | 0 | 12 | 628 | 128 | 722 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
PDB | 3u4a_A | 0 | 12 | 628 | 128 | 722 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
PDB | 2x41_A | 6e-35 | 13 | 636 | 117 | 707 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL905868 | 234 | 55 | 288 | 0 |
GW867487 | 324 | 108 | 431 | 0 |
EE180613 | 245 | 1 | 240 | 0 |
EE292970 | 243 | 1 | 238 | 0 |
JG068931 | 317 | 178 | 494 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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