| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si026354m |
| Family | GH28 |
| Protein Properties | Length: 454 Molecular Weight: 48529.9 Isoelectric Point: 6.8254 |
| Chromosome | Chromosome/Scaffold: 8 Start: 37423771 End: 37427792 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 418 | 0 |
| ADKGGAQLYVPKGRWLTGSFNLTSHLTLYLEKGAVIIGSKDSSQWPIVEPLPSYGQGLDLPGPRHRSLINGYNLTDVVITGNNGVIDGQGSVWWQWLRSH ELNHSRPHLLEFLHSEKIVISNLTFLNSPAWSIHPVYCSNVKVHNVTIKTALDAPLTDGIVPDSCSNVCIEDSTVSVSHEAISLKSGWDKYGISFGRPTS NIHINRVDLLSSSGAALAFGSEMSGGISDIHVNHLRIHDSYKGISFKTSPGRGGYIKEVVVSDVKMEDVHIGIEFTGNCSSHPDDSFDPSQLPVINQITM KNLVGTNISTVGVLSGIDGAPFTAICLSNLNFSMVADSTSGSWSCSNVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 454 Download |
| MKGLVVVLAL VLAAALGSVR GELRRLGDQA PPGSRPHSVT ITEFGAVGDG KTLNTVAFQN 60 AVFYVRSFAD KGGAQLYVPK GRWLTGSFNL TSHLTLYLEK GAVIIGSKDS SQWPIVEPLP 120 SYGQGLDLPG PRHRSLINGY NLTDVVITGN NGVIDGQGSV WWQWLRSHEL NHSRPHLLEF 180 LHSEKIVISN LTFLNSPAWS IHPVYCSNVK VHNVTIKTAL DAPLTDGIVP DSCSNVCIED 240 STVSVSHEAI SLKSGWDKYG ISFGRPTSNI HINRVDLLSS SGAALAFGSE MSGGISDIHV 300 NHLRIHDSYK GISFKTSPGR GGYIKEVVVS DVKMEDVHIG IEFTGNCSSH PDDSFDPSQL 360 PVINQITMKN LVGTNISTVG VLSGIDGAPF TAICLSNLNF SMVADSTSGS WSCSNVSGYS 420 QSVFPQPCRE LSDPSSSSSI CFSLSRYSAI AIA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-17 | 33 | 428 | 415 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 1.0e-20 | 37 | 425 | 413 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-22 | 130 | 416 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-25 | 36 | 426 | 403 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 3.0e-46 | 39 | 399 | 390 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC68574.1 | 0 | 32 | 452 | 28 | 448 | hypothetical protein OsI_36908 [Oryza sativa Indica Group] |
| RefSeq | NP_001068399.1 | 0 | 32 | 452 | 28 | 448 | Os11g0658800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001130359.1 | 0 | 20 | 453 | 26 | 458 | hypothetical protein LOC100191454 [Zea mays] |
| RefSeq | NP_001148987.1 | 0 | 37 | 447 | 39 | 450 | polygalacturonase [Zea mays] |
| RefSeq | XP_002451220.1 | 0 | 18 | 453 | 16 | 448 | hypothetical protein SORBIDRAFT_05g025980 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 7e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 7e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 7e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 7e-34 | 37 | 397 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000002 | 83 | 417 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
